PDB entry 2d4w

View 2d4w on RCSB PDB site
Description: Crystal structure of glycerol kinase from Cellulomonas sp. NT3060
Class: transferase
Keywords: Alpha and beta protein, Ribonuclease H-like motif, Actin-like ATPase domain, TRANSFERASE
Deposited on 2005-10-24, released 2006-11-14
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.195
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol kinase
    Species: Cellulomonas sp. [TaxId:40001]
    Database cross-references and differences (RAF-indexed):
    • PDB 2D4W (0-End)
    Domains in SCOPe 2.03: d2d4wa1, d2d4wa2
  • Chain 'B':
    Compound: glycerol kinase
    Species: Cellulomonas sp. [TaxId:40001]
    Database cross-references and differences (RAF-indexed):
    • PDB 2D4W (0-End)
    Domains in SCOPe 2.03: d2d4wb1, d2d4wb2
  • Heterogens: MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2d4wA (A:)
adyvlaidqgttssraivfdhsgeiystgqlehdqifpragwvehnpeqiwnnvrevvgl
altrgnlthediaavgitnqretavvwdkttgkpvynaivwqdtrtqkivdelggdegae
kyksivglplatyfsgpkikwildnvegarekaekgdllfgntdtwvlwnmtggteggvh
vtdvtnasrtmlmdldtlswrediaadmgiplsmlpdirsssevyghgrprglvpgvpia
gilgdqqaatfgqacfevgqakntygtgnflllntgtekvmskngllttvcykigdapav
yalegsiavtgslvqwlrdnlgmfedapdvewlagkvqdnggayfvpafsglfapywrpd
argalvgltryvnrnhiaraaleatafqsrevvdamnadsgvdltelrvdggmvanellm
qfqadqlgvdvvrpkvaettalgaayaagiavgfwkgeqdvidnwaedkrwspsmesger
erlyrnwkkavtktmewvdedveq

    Sequence, based on observed residues (ATOM records): (download) 
    >2d4wA (A:)
adyvlaidqgttssraivfdhsgeiystgqlehdqifpragwvehnpeqiwnnvrevvgl
altrgnlthediaavgitnqretavvwdkttgkpvynaivwqdtrtqkivdelggdegae
kyksivglplatyfsgpkikwildnvegarekaekgdllfgntdtwvlwnmtggteggvh
vtdvtnasrtmlmdldtlswrediaadmgiplsmlpdirsssevyghgrprglvpgvpia
gilgdqqaatfgqacfevgqakntygtgnflllntgtekvmskngllttvcykigdapav
yalegsiavtgslvqwlrdnlgmfedapdvewlagkvqdnggayfvpafsglfapywrpd
argalvgltryvnrnhiaraaleatafqsrevvdamnadsgvdltelrvdggmvanellm
qfqadqlgvdvvrpkvaettalgaayaagiavgfwkgeqdvidnwaedkrwspsmesger
erlyrnwkkavtktmewvdedve

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2d4wB (B:)
adyvlaidqgttssraivfdhsgeiystgqlehdqifpragwvehnpeqiwnnvrevvgl
altrgnlthediaavgitnqretavvwdkttgkpvynaivwqdtrtqkivdelggdegae
kyksivglplatyfsgpkikwildnvegarekaekgdllfgntdtwvlwnmtggteggvh
vtdvtnasrtmlmdldtlswrediaadmgiplsmlpdirsssevyghgrprglvpgvpia
gilgdqqaatfgqacfevgqakntygtgnflllntgtekvmskngllttvcykigdapav
yalegsiavtgslvqwlrdnlgmfedapdvewlagkvqdnggayfvpafsglfapywrpd
argalvgltryvnrnhiaraaleatafqsrevvdamnadsgvdltelrvdggmvanellm
qfqadqlgvdvvrpkvaettalgaayaagiavgfwkgeqdvidnwaedkrwspsmesger
erlyrnwkkavtktmewvdedveq

    Sequence, based on observed residues (ATOM records): (download) 
    >2d4wB (B:)
adyvlaidqgttssraivfdhsgeiystgqlehdqifpragwvehnpeqiwnnvrevvgl
altrgnlthediaavgitnqretavvwdkttgkpvynaivwqdtrtqkivdelggdegae
kyksivglplatyfsgpkikwildnvegarekaekgdllfgntdtwvlwnmtggteggvh
vtdvtnasrtmlmdldtlswrediaadmgiplsmlpdirsssevyghgrprglvpgvpia
gilgdqqaatfgqacfevgqakntygtgnflllntgtekvmskngllttvcykigdapav
yalegsiavtgslvqwlrdnlgmfedapdvewlagkvqdnggayfvpafsglfapywrpd
argalvgltryvnrnhiaraaleatafqsrevvdamnadsgvdltelrvdggmvanellm
qfqadqlgvdvvrpkvaettalgaayaagiavgfwkgeqdvidnwaedkrwspsmesger
erlyrnwkkavtktmewvdedve