PDB entry 1yud

View 1yud on RCSB PDB site
Description: X-ray Crystal Structure of Protein SO0799 from Shewanella oneidensis. Northeast Structural Genomics Consortium Target SoR12.
Class: structural genomics, unknown function
Keywords: SoR12, Q8E1N8, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Deposited on 2005-02-14, released 2005-03-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.237
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yuda1
  • Chain 'B':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudb_
  • Chain 'C':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudc_
  • Chain 'D':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudd_
  • Chain 'E':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yude_
  • Chain 'F':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudf_
  • Chain 'G':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudg_
  • Chain 'H':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudh_
  • Chain 'I':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudi_
  • Chain 'J':
    Compound: hypothetical protein SO0799
    Species: Shewanella oneidensis [TaxId:211586]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EIN8 (10-End)
      • modified residue (10)
      • modified residue (71)
      • modified residue (84)
      • modified residue (120)
      • modified residue (131)
      • modified residue (152)
    Domains in SCOPe 2.08: d1yudj_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yudA (A:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudA (A:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yudB (B:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudB (B:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yudC (C:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudC (C:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1yudD (D:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudD (D:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1yudE (E:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudE (E:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1yudF (F:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudF (F:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1yudG (G:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudG (G:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1yudH (H:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudH (H:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1yudI (I:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudI (I:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1yudJ (J:)
mghhhhhhshmqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtge
vshfhrltademwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsa
mnqdgfslvgcmvspgftfddfelfsqeallamypqhkavvqklsrpevn

    Sequence, based on observed residues (ATOM records): (download) 
    >1yudJ (J:)
mqnaddfikfleleqhveggfyrssyrsetafdpsrqlwssiyfllrtgevshfhrltad
emwyfhagqsltiymispegelttaqlgldlaagerpqflvpkgcifgsamnqdgfslvg
cmvspgftfddfelfsqeallamypqhkavvqklsrpe