PDB entry 1yd9

View 1yd9 on RCSB PDB site
Description: 1.6A Crystal Structure of the Non-Histone Domain of the Histone Variant MacroH2A1.1.
Class: structural protein
Keywords: Alpha-Beta Structure, A1pp Domain, Macro-Domain, STRUCTURAL PROTEIN
Deposited on 2004-12-23, released 2005-09-27
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.235
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Core histone macro-H2A.1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: H2afy
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yd9a1
  • Chain 'B':
    Compound: Core histone macro-H2A.1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: H2afy
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yd9b_
  • Chain 'C':
    Compound: Core histone macro-H2A.1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: H2afy
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yd9c2, d1yd9c3
  • Chain 'D':
    Compound: Core histone macro-H2A.1
    Species: Rattus norvegicus [TaxId:10116]
    Gene: H2afy
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1yd9d_
  • Heterogens: AU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1yd9A (A:)
gplgsgftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggk
efveavlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvkncla
laddrklksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesi
giyvqemakldan

    Sequence, based on observed residues (ATOM records): (download) 
    >1yd9A (A:)
gftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggkefvea
vlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvknclaladdr
klksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesigiyvq
emakldan

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1yd9B (B:)
gplgsgftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggk
efveavlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvkncla
laddrklksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesi
giyvqemakldan

    Sequence, based on observed residues (ATOM records): (download) 
    >1yd9B (B:)
gftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggkefvea
vlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvknclaladdr
klksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesigiyvq
emaklda

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1yd9C (C:)
gplgsgftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggk
efveavlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvkncla
laddrklksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesi
giyvqemakldan

    Sequence, based on observed residues (ATOM records): (download) 
    >1yd9C (C:)
sgftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggkefve
avlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvknclaladd
rklksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesigiyv
qemakld

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1yd9D (D:)
gplgsgftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggk
efveavlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvkncla
laddrklksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesi
giyvqemakldan

    Sequence, based on observed residues (ATOM records): (download) 
    >1yd9D (D:)
gftvlstkslflgqklqvvqadiasidsdavvhptntdfyiggevgstlekkggkefvea
vlelrkkngplevagaavsaghglpakfvihcnspvwgsdkceellektvknclaladdr
klksiafpsigsgrngfpkqtaaqlilkaissyfvstmsssiktvyfvlfdsesigiyvq
emakldan