PDB entry 1k6y

View 1k6y on RCSB PDB site
Description: Crystal Structure of a Two-Domain Fragment of HIV-1 Integrase
Class: transferase
Keywords: HIV-1, integrase, domain organization, TRANSFERASE
Deposited on 2001-10-17, released 2001-12-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.233
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: integrase
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72498 (0-End)
      • engineered mutation (130)
      • engineered mutation (138)
      • engineered mutation (184)
    Domains in SCOPe 2.08: d1k6ya1, d1k6ya2
  • Chain 'B':
    Compound: integrase
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72498 (0-211)
      • engineered mutation (130)
      • engineered mutation (138)
      • engineered mutation (184)
    Domains in SCOPe 2.08: d1k6yb1, d1k6yb2
  • Chain 'C':
    Compound: integrase
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72498 (0-End)
      • engineered mutation (130)
      • engineered mutation (138)
      • engineered mutation (184)
    Domains in SCOPe 2.08: d1k6yc1, d1k6yc2
  • Chain 'D':
    Compound: integrase
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72498 (0-End)
      • engineered mutation (130)
      • engineered mutation (138)
      • engineered mutation (184)
    Domains in SCOPe 2.08: d1k6yd1, d1k6yd2
  • Heterogens: ZN, K, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k6yA (A:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkgeamhgqvdcspgi
wqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsn
ftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlktavqmav
fihnkkrkggiggysagerivdiiatdiqtke

    Sequence, based on observed residues (ATOM records): (download) 
    >1k6yA (A:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkcspgiwqldcthle
gkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsnftsttvkaa
cdwagikqedgviesmnkelkkiigqvrdqaehlktavqmavfihnkkrkggiggysage
rivdiiatdiqt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1k6yB (B:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkgeamhgqvdcspgi
wqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsn
ftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlktavqmav
fihnkkrkggiggysagerivdiiatdiqtke

    Sequence, based on observed residues (ATOM records): (download) 
    >1k6yB (B:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkcspgiwqldcthle
gkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsnftsttvkaa
cdwagikqedgviesmnkelkkiigqvrdqaehlktavqmavfihnkkrkggiggysage
rivdiiatdiqtke

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1k6yC (C:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkgeamhgqvdcspgi
wqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsn
ftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlktavqmav
fihnkkrkggiggysagerivdiiatdiqtke

    Sequence, based on observed residues (ATOM records): (download) 
    >1k6yC (C:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkcspgiwqldcthle
gkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsnftsttvkaa
cdwagikqedgviesmnkelkkiigqvrdqaehlktavqmavfihnkkrkggiggysage
rivdiiatdiq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1k6yD (D:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkgeamhgqvdcspgi
wqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsn
ftsttvkaacdwagikqedgipynpqsqgviesmnkelkkiigqvrdqaehlktavqmav
fihnkkrkggiggysagerivdiiatdiqtke

    Sequence, based on observed residues (ATOM records): (download) 
    >1k6yD (D:)
fldgidkaqeehekyhsnwramasdfnlppvvakeivascdkcqlkcspgiwqldcthle
gkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtdngsnftsttvkaa
cdwagikqedsmnkelkkiigqvrdqaehlktavqmavfihnkkrkggiggysagerivd
iiatdiqtk