PDB entry 1k6o

View 1k6o on RCSB PDB site
Description: Crystal Structure of a Ternary SAP-1/SRF/c-fos SRE DNA Complex
Class: transcription/DNA
Keywords: protein/DNA complex, transcription factor, combinatorial gene regulation, ets proteins, mads-box proteins, transcription/DNA complex
Deposited on 2001-10-16, released 2002-01-17
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.19 Å
R-factor: 0.22
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ets-domain protein elk-4
    Species: Homo sapiens [TaxId:9606]
    Gene: Sap
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1k6oa_
  • Chain 'B':
    Compound: serum response factor
    Species: Homo sapiens [TaxId:9606]
    Gene: SRF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1k6ob_
  • Chain 'C':
    Compound: serum response factor
    Species: Homo sapiens [TaxId:9606]
    Gene: SRF
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1k6oc_
  • Chain 'D':
    Compound: 5'-d(*cp*ap*cp*ap*gp*gp*ap*tp*gp*tp*cp*cp*ap*tp*ap*tp*tp*ap*gp*gp*ap*cp*a)-3'
  • Chain 'E':
    Compound: 5'-d(*tp*gp*tp*cp*cp*tp*ap*ap*tp*ap*tp*gp*gp*ap*cp*ap*tp*cp*cp*tp*gp*tp*g)-3'

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k6oA (A:)
mdsaitlwqfllqllqkpqnkhmicwtsndgqfkllqaeevarlwgirknkpnmnydkls
ralryyyvkniikkvngqkfvykfvsypeilnm

    Sequence, based on observed residues (ATOM records): (download) 
    >1k6oA (A:)
saitlwqfllqllqkpqnkhmicwtsndgqfkllqaeevarlwgirknkpnmnydklsra
lryyyvkniikkvngqkfvykfvsypeil

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1k6oB (B:)
gakpgkktrgrvkikmefidnklrryttfskrktgimkkayelstltgtqvlllvasetg
hvytfatrklqpmitsetgkaliqtclnspdspprsdpttdqr

    Sequence, based on observed residues (ATOM records): (download) 
    >1k6oB (B:)
gkktrgrvkikmefidnklrryttfskrktgimkkayelstltgtqvlllvasetghvyt
fatrklqpmitsetgkaliqtclns

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1k6oC (C:)
gakpgkktrgrvkikmefidnklrryttfskrktgimkkayelstltgtqvlllvasetg
hvytfatrklqpmitsetgkaliqtclnspdspprsdpttdqr

    Sequence, based on observed residues (ATOM records): (download) 
    >1k6oC (C:)
kktrgrvkikmefidnklrryttfskrktgimkkayelstltgtqvlllvasetghvytf
atrklqpmitsetgkaliqtclns

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.