PDB entry 1jdi

View 1jdi on RCSB PDB site
Description: crystal structure of l-ribulose-5-phosphate 4-epimerase
Class: isomerase
Keywords: epimerase, ribulose, aldolase, ISOMERASE
Deposited on 2001-06-13, released 2002-01-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.208
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: l-ribulose 5 phosphate 4-epimerase
    Species: Escherichia coli [TaxId:83333]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1jdia_
  • Chain 'B':
    Compound: l-ribulose 5 phosphate 4-epimerase
    Species: Escherichia coli [TaxId:83333]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1jdib_
  • Chain 'C':
    Compound: l-ribulose 5 phosphate 4-epimerase
    Species: Escherichia coli [TaxId:83333]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1jdic_
  • Chain 'D':
    Compound: l-ribulose 5 phosphate 4-epimerase
    Species: Escherichia coli [TaxId:83333]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1jdid_
  • Chain 'E':
    Compound: l-ribulose 5 phosphate 4-epimerase
    Species: Escherichia coli [TaxId:83333]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1jdie_
  • Chain 'F':
    Compound: l-ribulose 5 phosphate 4-epimerase
    Species: Escherichia coli [TaxId:83333]
    Gene: AraD
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1jdif_
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1jdiA (A:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkhgakayygq

    Sequence, based on observed residues (ATOM records): (download) 
    >1jdiA (A:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1jdiB (B:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkhgakayygq

    Sequence, based on observed residues (ATOM records): (download) 
    >1jdiB (B:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1jdiC (C:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkhgakayygq

    Sequence, based on observed residues (ATOM records): (download) 
    >1jdiC (C:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1jdiD (D:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkhgakayygq

    Sequence, based on observed residues (ATOM records): (download) 
    >1jdiD (D:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkh

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1jdiE (E:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkhgakayygq

    Sequence, based on observed residues (ATOM records): (download) 
    >1jdiE (E:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkh

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1jdiF (F:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkhgakayygq

    Sequence, based on observed residues (ATOM records): (download) 
    >1jdiF (F:)
mledlkrqvleanlalpkhnlvtltwgnvsavdrergvfvikpsgvdysimtaddmvvvs
ietgevvegakkpssdtpthrllyqafpsiggivhthsrhatiwaqagqsipatgtthad
yfygtipctrkmtdaeingeyewetgnvivetfekqgidaaqmpgvlvhshgpfawgkna
edavhnaivleevaymgifcrqlapqlpdmqqtllnkhylrkh