PDB entry 1gvm

View 1gvm on RCSB PDB site
Description: choline binding domain of the major autolysin (c-lyta) from streptococcus pneumoniae
Class: choline-binding domain
Keywords: choline-binding domain, cell wall attachment
Deposited on 2002-02-15, released 2002-08-01
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.226
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: autolysin
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GVM
      • variant (121)
    • Uniprot P06653 (Start-135)
    Domains in SCOPe 2.06: d1gvma_
  • Chain 'B':
    Compound: autolysin
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GVM (Start-4)
      • variant (121)
    • Uniprot P06653 (5-135)
    Domains in SCOPe 2.06: d1gvmb_
  • Chain 'C':
    Compound: autolysin
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GVM
      • variant (121)
    • Uniprot P06653 (Start-135)
    Domains in SCOPe 2.06: d1gvmc_
  • Chain 'D':
    Compound: autolysin
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GVM
      • variant (121)
    • Uniprot P06653 (Start-135)
    Domains in SCOPe 2.06: d1gvmd_
  • Chain 'E':
    Compound: autolysin
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GVM
      • variant (121)
    • Uniprot P06653 (Start-135)
    Domains in SCOPe 2.06: d1gvme_
  • Chain 'F':
    Compound: autolysin
    Species: STREPTOCOCCUS PNEUMONIAE [TaxId:1313]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GVM (Start-4)
      • variant (121)
    • Uniprot P06653 (5-135)
    Domains in SCOPe 2.06: d1gvmf_
  • Heterogens: CHT, DDQ, TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1gvmA (A:)
mkggivhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwk
kiadkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtla
drpeftvepdglitvk

    Sequence, based on observed residues (ATOM records): (download) 
    >1gvmA (A:)
gsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkiadkwyyf
neegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrpeftvep
dglitvk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1gvmB (B:)
mkggivhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwk
kiadkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtla
drpeftvepdglitvk

    Sequence, based on observed residues (ATOM records): (download) 
    >1gvmB (B:)
givhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkia
dkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrp
eftvepdglitvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1gvmC (C:)
mkggivhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwk
kiadkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtla
drpeftvepdglitvk

    Sequence, based on observed residues (ATOM records): (download) 
    >1gvmC (C:)
gsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkiadkwyyf
neegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrpeftvep
dglitvk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1gvmD (D:)
mkggivhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwk
kiadkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtla
drpeftvepdglitvk

    Sequence, based on observed residues (ATOM records): (download) 
    >1gvmD (D:)
ypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkiadkwyyfne
egamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrpeftvepdg
litvk

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1gvmE (E:)
mkggivhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwk
kiadkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtla
drpeftvepdglitvk

    Sequence, based on observed residues (ATOM records): (download) 
    >1gvmE (E:)
kdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkkiadkwyyfneeg
amktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladrpeftvepdgli
tvk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1gvmF (F:)
mkggivhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwk
kiadkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtla
drpeftvepdglitvk

    Sequence, based on observed residues (ATOM records): (download) 
    >1gvmF (F:)
ggivhsdgsypkdkfekingtwyyfdssgymladrwrkhtdgnwywfdnsgematgwkki
adkwyyfneegamktgwvkykdtwyyldakegamvsnafiqsadgtgwyylkpdgtladr
peftvepdglitvk