PDB entry 1gdt

View 1gdt on RCSB PDB site
Description: crystal structure of a site-specific recombinase, gamma-delta resolvase complexed with a 34 bp cleavage site
Class: DNA binding protein/DNA
Keywords: protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex
Deposited on 1995-04-11, released 1996-04-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-11.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.235
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (gamma delta resolvase)
    Species: Escherichia coli [TaxId:562]
    Gene: TNPR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1gdta1, d1gdta2
  • Chain 'B':
    Compound: protein (gamma delta resolvase)
    Species: Escherichia coli [TaxId:562]
    Gene: TNPR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1gdtb1, d1gdtb2
  • Chain 'C':
    Compound: site I of res DNA
  • Chain 'D':
    Compound: site I of res DNA
  • Chain 'E':
    Compound: site I of res DNA
  • Chain 'F':
    Compound: site I of res DNA
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gdtA (A:)
mrlfgyarvstsqqsldiqvralkdagvkanriftdkasgsssdrkgldllrmkveegdv
ilvkkldrlgrdtadmiqlikefdaqgvsirfiddgistdgemgkmvvtilsavaqaerq
rilertnegrqeamakgvvfgrkrkidrdavlnmwqqglgashisktmniarstvykvin
esn

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gdtB (B:)
mrlfgyarvstsqqsldiqvralkdagvkanriftdkasgsssdrkgldllrmkveegdv
ilvkkldrlgrdtadmiqlikefdaqgvsirfiddgistdgemgkmvvtilsavaqaerq
rilertnegrqeamakgvvfgrkrkidrdavlnmwqqglgashisktmniarstvykvin
esn

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.