Lineage for d1m13a_ (1m13 A:)

  1. Root: SCOP 1.65
  2. 275720Class a: All alpha proteins [46456] (179 folds)
  3. 285381Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 285382Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (1 family) (S)
  5. 285383Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (25 proteins)
  6. 285516Protein Pregnane x receptor, PXR [63624] (1 species)
  7. 285517Species Human (Homo sapiens) [TaxId:9606] [63625] (3 PDB entries)
  8. 285518Domain d1m13a_: 1m13 A: [84746]
    complexed with hyf

Details for d1m13a_

PDB Entry: 1m13 (more details), 2.15 Å

PDB Description: Crystal Structure of the Human Pregane X Receptor Ligand Binding Domain in Complex with Hyperforin, a Constituent of St. John's Wort

SCOP Domain Sequences for d1m13a_:

Sequence, based on SEQRES records: (download)

>d1m13a_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo sapiens)}
glteeqrmmirelmdaqmktfdttfshfknfrlpgvlssgcelpeslqapsreeaakwsq
vrkdlcslkvslqlrgedgsvwnykppadsggkeifsllphmadmstymfkgiisfakvi
syfrdlpiedqisllkgaafelcqlrfntvfnaetgtwecgrlsycledtaggfqqllle
pmlkfhymlkklqlheeeyvlmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecnr
pqpahrflflkimamltelrsinaqhtqrllriqdihpfatplmqelfgitgs

Sequence, based on observed residues (ATOM records): (download)

>d1m13a_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo sapiens)}
glteeqrmmirelmdaqmktfdttfshfknfrlpgvkwsqvrkdlcslkvslqlrgedgs
vwnykppadsggkeifsllphmadmstymfkgiisfakvisyfrdlpiedqisllkgaaf
elcqlrfntvfnaetgtwecgrlsycledtaggfqqlllepmlkfhymlkklqlheeeyv
lmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecnrpqpahrflflkimamltelr
sinaqhtqrllriqdihpfatplmqelfgitgs

SCOP Domain Coordinates for d1m13a_:

Click to download the PDB-style file with coordinates for d1m13a_.
(The format of our PDB-style files is described here.)

Timeline for d1m13a_: