SCOPe 2.07: Domain d1lm1a2: 1lm1 A:439-1239

Lineage for d1lm1a2 (1lm1 A:439-1239)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families)

5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)

6. Protein Alpha subunit of glutamate synthase, central and FMN domains [69381] (2 species)
   Central domain (residues 423-780) may be a rudiment form of the FMN domain

7. Species Synechocystis sp. [TaxId:1143] [75055] (5 PDB entries)

8. Domain d1lm1a2: 1lm1 A:439-1239 [74024]
   Other proteins in same PDB: d1lm1a1, d1lm1a3
   complexed with act, f3s, fmn

Details for d1lm1a2

PDB Entry: 1lm1, 2.8 Å

PDB Description: Structural studies on the synchronization of catalytic centers in glutamate synthase: native enzyme

PDB Compounds: (A:) Ferredoxin-dependent glutamate synthase

SCOPe Domain Sequences for d1lm1a2:

Sequence, based on SEQRES records:

>d1lm1a2 c.1.4.1 (A:439-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}
daqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtplavlshkprllydyfkqr
faqvtnppidplrenlvmslamflgkrgnllepkaesartiklrsplvnevelqaiktgq
lqvaevstlydldgvnsledaltnlvktaiatvqagaeilvltdrpngailtenqsfipp
llavgavhhhliraglrlkaslivdtaqcwsthhfaclvgygasaicpylalesvrqwwl
dektqklmengrldridlptalknyrqsveaglfkilskmgisllasyhgaqifeaiglg
aelveyafagttsrvggltiadvagevmvfhgmafpemakklenfgfvnyrpggeyhmns
pemskslhkavaaykvggngnngeaydhyelyrqylkdrpvtalrdlldfnadqpaisle
evesvesivkrfctggmslgalsreahetlaiamnrlgaksnsgeggedvvryltlddvd
segnsptlphlhglqngdtansaikqiasgrfgvtpeylmsgkqleikmaqgakpgeggq
lpgkkvseyiamlrrskpgvtlisppphhdiysiedlaqliydlhqinpeaqvsvklvae
igigtiaagvakanadiiqisghdggtgasplssikhagspwelgvtevhrvlmenqlrd
rvllradgglktgwdvvmaalmgaeeygfgsiamiaegcimarvchtnncpvgvatqqer
lrqrfkgvpgqvvnffyfiaeevrsllahlgyrslddiigrtdllkvrsdvqlsktqnlt
ldcllnlpdtkqnrqwlnhep

Sequence, based on observed residues (ATOM records):

>d1lm1a2 c.1.4.1 (A:439-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}
daqtvlqqqaafgytaedvemvvvpmasqgkeptfcmgddtplavlshkprllydyfkqr
faqvtnppidplrenlvmslamflgkrgnllepkaeklrsplvnevelqaiktgqlqvae
vstlydldgvnsledaltnlvktaiatvqagaeilvltdrpngailtenqsfippllavg
avhhhliraglrlkaslivdtaqcwsthhfaclvgygasaicpylalesvrqwwldektq
klmengrldridlptalknyrqsveaglfkilskmgisllasyhgaqifeaiglgaelve
yafagttsrvggltiadvagevmvfhgmafpemakklenfgfvnyrpggeyhmnspemsk
slhkavaayydhyelyrqylkdrpvtalrdlldfnadqpaisleevesvesivkrfctgg
mslgalsreahetlaiamnrlgaksnsgeggedvvryltlddvdsegnsptlphlhglqn
gdtansaikqiasgrfgvtpeylmsgkqleikmaqgakpgeggqlpgkkvseyiamlrrs
kpgvtlisppphhdiysiedlaqliydlhqinpeaqvsvklvaeigigtiaagvakanad
iiqisghdggtgasplssikhagspwelgvtevhrvlmenqlrdrvllradgglktgwdv
vmaalmgaeeygfgsiamiaegcimarvchtnncpvgvatqqerlrqrfkgvpgqvvnff
yfiaeevrsllahlgyrslddiigrtdllkvrsdvqlsktqnltldcllnlpdtkqnrqw
lnhep

Timeline for d1lm1a2:

• d1lm1a2 first appeared in SCOP 1.61
  
• d1lm1a2 appears in SCOPe 2.06
  
• d1lm1a2 appears in the current release, SCOPe 2.08