SCOP 1.67: Protein: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF

Lineage for Protein: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF

Root: SCOP 1.67
Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
Fold d.79: Bacillus chorismate mutase-like [55297] (7 superfamilies)
core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest

Superfamily d.79.5: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF [69765] (1 family)

(S)

forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)

Family d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF [69766] (1 protein)
Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF [69767] (3 species)

Species:

Escherichia coli [TaxId:562] [69768] (4 PDB entries)
1. Domains for 1gx1:
  1. Domain d1gx1a_: 1gx1 A: [70675]
  2. Domain d1gx1b_: 1gx1 B: [70676]
  3. Domain d1gx1c_: 1gx1 C: [70677]
    complexed with cdf, mn, mse, so4, zn
2. Domain for 1jy8:
  - Domain d1jy8a_: 1jy8 A: [67452]
    complexed with c, cdi, zn
3. Domain for 1knj:
  - Domain d1knja_: 1knj A: [72778]
    complexed with c5p, cdi, mn, mse
4. Domain for 1knk:
  - Domain d1knka_: 1knk A: [72779]
    complexed with mn
Haemophilus influenzae [TaxId:727] [75479] (3 PDB entries)
1. Domains for 1jn1:
  1. Domain d1jn1a_: 1jn1 A: [71754]
  2. Domain d1jn1b_: 1jn1 B: [71755]
  3. Domain d1jn1c_: 1jn1 C: [71756]
    structural genomics
    complexed with co, so4
2. Domains for 1vh8:
  1. Domain d1vh8a_: 1vh8 A: [100647]
  2. Domain d1vh8b_: 1vh8 B: [100648]
  3. Domain d1vh8c_: 1vh8 C: [100649]
  4. Domain d1vh8d_: 1vh8 D: [100650]
  5. Domain d1vh8e_: 1vh8 E: [100651]
  6. Domain d1vh8f_: 1vh8 F: [100652]
    structural genomics
    complexed with acy, pop
3. Domains for 1vha:
  1. Domain d1vhaa_: 1vha A: [100655]
  2. Domain d1vhab_: 1vha B: [100656]
  3. Domain d1vhac_: 1vha C: [100657]
  4. Domain d1vhad_: 1vha D: [100658]
  5. Domain d1vhae_: 1vha E: [100659]
  6. Domain d1vhaf_: 1vha F: [100660]
    structural genomics
    complexed with acy, mn, pop
Thermus thermophilus [TaxId:274] [82720] (4 PDB entries)
1. Domains for 1iv1:
  1. Domain d1iv1a_: 1iv1 A: [76816]
  2. Domain d1iv1b_: 1iv1 B: [76817]
  3. Domain d1iv1c_: 1iv1 C: [76818]
  4. Domain d1iv1d_: 1iv1 D: [76819]
  5. Domain d1iv1e_: 1iv1 E: [76820]
  6. Domain d1iv1f_: 1iv1 F: [76821]
2. Domains for 1iv2:
  1. Domain d1iv2a_: 1iv2 A: [76822]
  2. Domain d1iv2b_: 1iv2 B: [76823]
  3. Domain d1iv2c_: 1iv2 C: [76824]
  4. Domain d1iv2d_: 1iv2 D: [76825]
  5. Domain d1iv2e_: 1iv2 E: [76826]
  6. Domain d1iv2f_: 1iv2 F: [76827]
    complexed with cdp, mg; mutant
3. Domains for 1iv3:
  1. Domain d1iv3a_: 1iv3 A: [76828]
  2. Domain d1iv3b_: 1iv3 B: [76829]
  3. Domain d1iv3c_: 1iv3 C: [76830]
  4. Domain d1iv3d_: 1iv3 D: [76831]
  5. Domain d1iv3e_: 1iv3 E: [76832]
  6. Domain d1iv3f_: 1iv3 F: [76833]
    complexed with mg; mutant
4. Domains for 1iv4:
  1. Domain d1iv4a_: 1iv4 A: [76834]
  2. Domain d1iv4b_: 1iv4 B: [76835]
  3. Domain d1iv4c_: 1iv4 C: [76836]
  4. Domain d1iv4d_: 1iv4 D: [76837]
  5. Domain d1iv4e_: 1iv4 E: [76838]
  6. Domain d1iv4f_: 1iv4 F: [76839]
    complexed with c5p, mg; mutant

More info for Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF

Timeline for Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF:

Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF first appeared in SCOP 1.59
Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF appears in SCOP 1.65
Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF appears in SCOP 1.69
Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF appears in the current release, SCOPe 2.08, called Protein 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF from d.79.5.1: IpsF-like