SCOPe 2.08: Family d.79.5.1: IpsF-like

Lineage for Family d.79.5.1: IpsF-like

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.79: Bacillus chorismate mutase-like [55297] (9 superfamilies)
   core: beta-alpha-beta-alpha-beta(2); mixed beta-sheet: order: 1423, strand 4 is antiparallel to the rest

4. Superfamily d.79.5: IpsF-like [69765] (2 families)
   forms trimers with three closely packed beta-sheets; possible link between the YjgF-like (d.79.1) and 4'-phosphopantetheinyl transferase superfamilies (d.150.1)

5. Family d.79.5.1: IpsF-like [69766] (3 proteins)
   automatically mapped to Pfam PF02542

Proteins:

1. 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF [69767] (6 species)

   1. Species Escherichia coli K-12 [TaxId:83333] [188969] (5 PDB entries)

   2. Species Escherichia coli [TaxId:562] [69768] (14 PDB entries)
      Uniprot P62617 ! Uniprot P36663

   3. Species Haemophilus influenzae [TaxId:727] [75479] (3 PDB entries)

   4. Species Shewanella oneidensis [TaxId:70863] [118026] (1 PDB entry)
      Uniprot Q8EBR3

   5. Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [187992] (1 PDB entry)

   6. Species Thermus thermophilus [TaxId:274] [82720] (4 PDB entries)

2. IspD/ispF bifunctional enzyme, MECDP synthase domain [118027] (1 species)

   • Species Campylobacter jejuni [TaxId:197] [118028] (2 PDB entries)
     Uniprot Q9PM68

3. automated matches [190985] (6 species)
   not a true protein

   1. Species Bacillus subtilis [TaxId:224308] [332335] (2 PDB entries)

   2. Species Burkholderia pseudomallei [TaxId:28450] [189021] (2 PDB entries)

   3. Species Burkholderia pseudomallei [TaxId:320372] [378991] (1 PDB entry)

   4. Species Burkholderia pseudomallei [TaxId:357348] [340879] (1 PDB entry)

   5. Species Salmonella typhimurium [TaxId:90371] [189751] (2 PDB entries)

   6. Species Yersinia pestis [TaxId:214092] [188680] (2 PDB entries)

More info for Family d.79.5.1: IpsF-like

Timeline for Family d.79.5.1: IpsF-like:

• Family d.79.5.1: IpsF-like first appeared in SCOP 1.59, called Family d.79.5.1: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
  
• Family d.79.5.1: IpsF-like appears in SCOPe 2.07