SCOPe 2.08: Domain d1hr6b1: 1hr6 B:24-245

Lineage for d1hr6b1 (1hr6 B:24-245)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.185: LuxS/MPP-like metallohydrolase [63410] (1 superfamily)
   core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta

4. Superfamily d.185.1: LuxS/MPP-like metallohydrolase [63411] (3 families)
   Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues

5. Family d.185.1.1: MPP-like [63412] (7 proteins)
   Common fold elaborated with many additional structures; duplication: each family member consists of two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)-beta structure, but only the N-terminal domain of MPP beta chain binds the catalytic metal

6. Protein Mitochondrial processing peptidase (MPP) beta chain [64300] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64301] (4 PDB entries)

8. Domain d1hr6b1: 1hr6 B:24-245 [61166]
   Other proteins in same PDB: d1hr6a1, d1hr6a2, d1hr6c1, d1hr6c2, d1hr6d3, d1hr6e1, d1hr6e2, d1hr6f3, d1hr6g1, d1hr6g2
   complexed with epe, zn

Details for d1hr6b1

PDB Entry: 1hr6, 2.5 Å

PDB Description: Yeast Mitochondrial Processing Peptidase

PDB Compounds: (B:) mitochondrial processing peptidase beta subunit

SCOPe Domain Sequences for d1hr6b1:

Sequence; same for both SEQRES and ATOM records:

>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
pgtrtsklpngltiateyipntssatvgifvdagsraenvknngtahflehlafkgtqnr
pqqgieleienigshlnaytsrentvyyakslqedipkavdilsdiltksvldnsaiere
rdviireseevdkmydevvfdhlheitykdqplgrtilgpikniksitrtdlkdyitkny
kgdrmvlagagavdheklvqyaqkyfghvpksespvplgspr

Timeline for d1hr6b1:

• d1hr6b1 first appeared in SCOP 1.57
  
• d1hr6b1 appears in SCOPe 2.07