SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family h.3.1.1: Influenza hemagglutinin (stalk)

  1. Root: SCOPe 2.06
  2. 2237529Class h: Coiled coil proteins [57942] (7 folds)
  3. 2238933Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 2238934Superfamily h.3.1: Influenza hemagglutinin (stalk) [58064] (2 families) (S)
  5. 2238935Family h.3.1.1: Influenza hemagglutinin (stalk) [58065] (2 protein domains)

Protein Domains:

  1. 2238936Influenza hemagglutinin (stalk) [58066] (11 species)
    trimer
    1. 2238937Species Influenza a virus (a/anhui/1-balf_rg45/2013(h7n9)) [TaxId:1481988] [311113] (1 PDB entry)
    2. 2238939Species Influenza a virus (a/brevig mission/1/1918(h1n1)) [TaxId:88776] [255844] (1 PDB entry)
    3. 2238941Species Influenza a virus (a/chicken/new york/14677-13/1998(h6n2)) [TaxId:402503] [269458] (2 PDB entries)
    4. 2238954Species Influenza a virus (strain a/hong kong/1/1968 h3n2) [TaxId:506350] [311114] (2 PDB entries)
    5. 2238958Species Influenza A virus, different strains [TaxId:11320] [58067] (114 PDB entries)
    6. 2239299Species Influenza b virus [255766] (1 PDB entry)
    7. 2239301Species Influenza b virus (strain b/hong kong/8/73) [TaxId:11531] [255583] (2 PDB entries)
    8. 2239304Species Influenza b virus [TaxId:107412] [256374] (3 PDB entries)
    9. 2239314Species Influenza b virus [TaxId:416659] [256362] (1 PDB entry)
    10. 2239318Species Influenza C virus [TaxId:11552] [58068] (1 PDB entry)
    11. 2284515Species Influenza a virus (strain a/northern territory/60/1968 h3n2) [TaxId:384505] [327816] (1 PDB entry)
  2. 2239322automated matches [254646] (33 species)
    not a true protein
    1. 2239323Species Influenza a virus (a/brevig mission/1/1918(h1n1)) [TaxId:88776] [255662] (1 PDB entry)
    2. 2239327Species Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId:867285] [267994] (1 PDB entry)
    3. 2239331Species Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId:159470] [258552] (2 PDB entries)
    4. 2239338Species Influenza a virus (a/equine/richmond/1/2007)(h3n8)) [TaxId:560387] [258556] (3 PDB entries)
    5. 2239348Species Influenza a virus (a/mallard/alberta/35/1976(h1n1)) [TaxId:352520] [255663] (1 PDB entry)
    6. 2239352Species Influenza a virus (a/mallard/sweden/51/2002 (h10n2)) [TaxId:757360] [256742] (3 PDB entries)
    7. 2239362Species Influenza a virus (a/netherlands/219/2003(h7n7)) [TaxId:680693] [256234] (3 PDB entries)
    8. 2239372Species Influenza a virus (a/turkey/italy/214845/2002 (h7n3)) [TaxId:265120] [256217] (1 PDB entry)
    9. 2239374Species Influenza a virus (a/turkey/italy/214845/2002(h7n3)) [TaxId:265120] [256216] (1 PDB entry)
    10. 2239376Species Influenza a virus (a/turkey/turkey/1/2005(h5n1)) [TaxId:375457] [256678] (4 PDB entries)
    11. 2239389Species Influenza a virus (a/vietnam/1194/2004(h5n1)) [TaxId:644788] [256672] (8 PDB entries)
    12. 2239398Species Influenza a virus (a/vietnam/1203/2004(h5n1)) [TaxId:644788] [275158] (1 PDB entry)
    13. 2239401Species Influenza a virus (a/wdk/jx/12416/2005(h1n1)) [TaxId:666057] [255864] (4 PDB entries)
    14. 2239406Species Influenza a virus h6n1 subtype [TaxId:119212] [269448] (1 PDB entry)
    15. 2239410Species Influenza A virus [TaxId:11320] [255822] (24 PDB entries)
    16. 2239473Species Influenza a virus [TaxId:1332244] [256359] (9 PDB entries)
    17. 2239500Species Influenza a virus [TaxId:365085] [256809] (1 PDB entry)
    18. 2239504Species Influenza a virus [TaxId:375457] [256202] (1 PDB entry)
    19. 2239508Species Influenza A virus [TaxId:387161] [255913] (6 PDB entries)
    20. 2239517Species Influenza a virus [TaxId:393616] [267957] (1 PDB entry)
    21. 2239524Species Influenza a virus [TaxId:407713] [256805] (1 PDB entry)
    22. 2239526Species Influenza a virus [TaxId:573943] [256802] (1 PDB entry)
    23. 2239528Species Influenza A virus [TaxId:59375] [255946] (2 PDB entries)
    24. 2239531Species Influenza A virus [TaxId:641501] [255945] (7 PDB entries)
    25. 2239566Species Influenza a virus [TaxId:644788] [256161] (3 PDB entries)
    26. 2239576Species Influenza A virus [TaxId:654811] [256349] (1 PDB entry)
    27. 2239578Species Influenza virus (a/turkey/italy/214845/2002 (h7n3)) [TaxId:265120] [256215] (1 PDB entry)
    28. 2239580Species Influenza virus a/jiangxi- donghu/346/2013 (h10n8) [TaxId:11309] [256760] (1 PDB entry)
    29. 2239584Species Influenza virus [TaxId:284218] [256204] (3 PDB entries)
    30. 2239588Species Influenza virus [TaxId:375457] [256203] (2 PDB entries)
    31. 2239595Species Influenza virus [TaxId:644788] [256201] (3 PDB entries)
    32. 2268896Species Unidentified influenza virus [TaxId:119212] [312202] (5 PDB entries)
    33. 2289464Species Influenza a virus [TaxId:506350] [332765] (1 PDB entry)

More info for Family h.3.1.1: Influenza hemagglutinin (stalk)

Timeline for Family h.3.1.1: Influenza hemagglutinin (stalk):