SCOP 1.67: Species: Escherichia coli

Lineage for Species: Escherichia coli

Root: SCOP 1.67
Class d: Alpha and beta proteins (a+b) [53931] (260 folds)
Fold d.167: Peptide deformylase [56419] (1 superfamily)
alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
Superfamily d.167.1: Peptide deformylase [56420] (1 family)
nickel-dependent enzyme
Family d.167.1.1: Peptide deformylase [56421] (1 protein)
Protein Peptide deformylase [56422] (8 species)
Species Escherichia coli [TaxId:562] [56423] (15 PDB entries)

PDB entries in Species: Escherichia coli:

Domain(s) for 1bs4:
1. Domain d1bs4a_: 1bs4 A: [42287]
2. Domain d1bs4b_: 1bs4 B: [42288]
3. Domain d1bs4c_: 1bs4 C: [42289]
  complexed with 2pe, so4, zn3
Domain(s) for 1bs5:
1. Domain d1bs5a_: 1bs5 A: [42296]
2. Domain d1bs5b_: 1bs5 B: [42297]
3. Domain d1bs5c_: 1bs5 C: [42298]
  complexed with so4, zn3
Domain(s) for 1bs6:
1. Domain d1bs6a_: 1bs6 A: [42290]
2. Domain d1bs6b_: 1bs6 B: [42291]
3. Domain d1bs6c_: 1bs6 C: [42292]
  complexed with ni1, ni2, so4
Domain(s) for 1bs7:
1. Domain d1bs7a_: 1bs7 A: [42299]
2. Domain d1bs7b_: 1bs7 B: [42300]
3. Domain d1bs7c_: 1bs7 C: [42301]
  complexed with ni1, so4
Domain(s) for 1bs8:
1. Domain d1bs8a_: 1bs8 A: [42293]
2. Domain d1bs8b_: 1bs8 B: [42294]
3. Domain d1bs8c_: 1bs8 C: [42295]
  complexed with so4, zn3, zno
Domain(s) for 1bsj:
- Domain d1bsja_: 1bsj A: [42302]
  complexed with co, mln, po4
Domain(s) for 1bsk:
- Domain d1bska_: 1bsk A: [42303]
  complexed with mln, po4, zn
Domain(s) for 1bsz:
1. Domain d1bsza_: 1bsz A: [42281]
2. Domain d1bszb_: 1bsz B: [42282]
3. Domain d1bszc_: 1bsz C: [42283]
  complexed with 2pe, of1, so4
Domain(s) for 1def:
- Domain d1def__: 1def - [42306]
  incorrect model(?)
  complexed with zn
Domain(s) for 1dff:
- Domain d1dff__: 1dff - [42304]
  complexed with zn
Domain(s) for 1g27:
1. Domain d1g27a_: 1g27 A: [65106]
2. Domain d1g27b_: 1g27 B: [65107]
3. Domain d1g27c_: 1g27 C: [65108]
  complexed with bb1, ni
Domain(s) for 1g2a:
1. Domain d1g2aa_: 1g2a A: [65109]
2. Domain d1g2ab_: 1g2a B: [65110]
3. Domain d1g2ac_: 1g2a C: [65111]
  complexed with bb2, ni
Domain(s) for 1icj:
1. Domain d1icja_: 1icj A: [42284]
2. Domain d1icjb_: 1icj B: [42285]
3. Domain d1icjc_: 1icj C: [42286]
  complexed with ni, pgo, so4
Domain(s) for 1lru:
1. Domain d1lrua_: 1lru A: [74228]
2. Domain d1lrub_: 1lru B: [74229]
3. Domain d1lruc_: 1lru C: [74230]
  complexed with antibiotic actinonin
  complexed with bb2, so4, zn
Domain(s) for 2def:
- Domain d2def__: 2def - [42305]
  complexed with ni; mutant

More info for Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase

Timeline for Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase:

Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase first appeared (with stable ids) in SCOP 1.55
Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase appears in SCOP 1.65
Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase appears in SCOP 1.69
Species Escherichia coli [TaxId:562] from d.167.1.1 Peptide deformylase appears in the current release, SCOPe 2.08