SCOPe 2.04: Family d.110.3.1: PYP-like

Lineage for Family d.110.3.1: PYP-like

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families)
   alpha-beta(2)-alpha(2)-beta(3)

5. Family d.110.3.1: PYP-like [55786] (3 proteins)

Proteins:

1. Photoactive yellow protein, PYP [55787] (1 species)

   • Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (62 PDB entries)
     Uniprot P16113

2. PYP domain of sensor histidine kinase Ppr [82762] (1 species)

   • Species Rhodospirillum centenum [TaxId:34018] [82763] (1 PDB entry)

3. automated matches [254452] (1 species)
   not a true protein

   • Species Halorhodospira halophila [TaxId:1053] [254966] (2 PDB entries)

More info for Family d.110.3.1: PYP-like

Timeline for Family d.110.3.1: PYP-like:

• Family d.110.3.1: PYP-like first appeared (with stable ids) in SCOP 1.55, called Family d.110.3.1: Photoactive yellow protein, PYP
  
• Family d.110.3.1: PYP-like appears in SCOPe 2.03
  
• Family d.110.3.1: PYP-like appears in SCOPe 2.05
  
• Family d.110.3.1: PYP-like appears in the current release, SCOPe 2.08