SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family c.23.5.1: Flavodoxin-related

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2101600Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 2102350Superfamily c.23.5: Flavoproteins [52218] (9 families) (S)
  5. 2102351Family c.23.5.1: Flavodoxin-related [52219] (6 protein domains)
    binds FMN

Protein Domains:

  1. 2102352Flavodoxin [52220] (10 species)
    1. 2102353Species Anabaena, pcc 7119 and 7120 [TaxId:1163] [52223] (8 PDB entries)
    2. 2102367Species Azotobacter vinelandii [TaxId:354] [142046] (1 PDB entry)
      Uniprot P00324 1-179
    3. 2102369Species Chondrus crispus [TaxId:2769] [52221] (1 PDB entry)
    4. 2102371Species Clostridium beijerinckii [TaxId:1520] [52226] (16 PDB entries)
    5. 2102388Species Desulfovibrio vulgaris [TaxId:881] [52222] (25 PDB entries)
      Uniprot P00323
    6. 2102417Species Escherichia coli [TaxId:1403831] [272862] (1 PDB entry)
    7. 2102419Species Escherichia coli [TaxId:562] [52224] (2 PDB entries)
    8. 2102423Species Helicobacter pylori [TaxId:210] [69446] (1 PDB entry)
    9. 2102425Species Megasphaera elsdenii [TaxId:907] [142045] (1 PDB entry)
      Uniprot P00321 1-137
    10. 2102427Species Synechococcus elongatus PCC 7942 [TaxId:1140] [52225] (10 PDB entries)
  2. 2102438FMN-binding domain of the cytochrome P450bm-3 [52227] (1 species)
  3. 2102441Nitric oxide reductase C-terminal domain [142047] (2 species)
    1. 2102442Species Giardia intestinalis [TaxId:5741] [231193] (1 PDB entry)
    2. 2102445Species Moorella thermoacetica [TaxId:1525] [142048] (3 PDB entries)
      Uniprot Q9FDN7 251-399
  4. 2102455ROO-like flavoprotein TM0755, C-terminal domain [110466] (1 species)
  5. 2102459Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain [52229] (1 species)
  6. 2102463automated matches [190443] (6 species)
    not a true protein
    1. 2102464Species Anabaena sp. [TaxId:1168] [188238] (5 PDB entries)
    2. 2102476Species Desulfovibrio gigas [TaxId:879] [194059] (1 PDB entry)
    3. 2102479Species Helicobacter pylori [TaxId:210] [187348] (2 PDB entries)
    4. 2102483Species Rhodobacter capsulatus [TaxId:1061] [189322] (1 PDB entry)
    5. 2293867Species Azotobacter vinelandii [TaxId:354] [337168] (1 PDB entry)
    6. 2293885Species Nostoc sp. [TaxId:1168] [337186] (1 PDB entry)

More info for Family c.23.5.1: Flavodoxin-related

Timeline for Family c.23.5.1: Flavodoxin-related: