SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family c.1.14.1: RuBisCo, large subunit, C-terminal domain

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2088460Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families) (S)
    automatically mapped to Pfam PF00016
  5. 2088461Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 protein domains)
    N-terminal domain is alpha+beta

Protein Domains:

  1. 2088462Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (12 species)
    1. 2088463Species Alcaligenes eutrophus [TaxId:106590] [51655] (1 PDB entry)
    2. 2088468Species Chlorobium tepidum [TaxId:1097] [117389] (2 PDB entries)
      Uniprot Q8KBL4 1-428
    3. 2088473Species Galdieria partita [TaxId:83374] [51654] (2 PDB entries)
    4. 2088486Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [69403] (4 PDB entries)
    5. 2088523Species Halothiobacillus neapolitanus [TaxId:927] [141849] (1 PDB entry)
      Uniprot O85040 143-460
    6. 2088525Species Pyrococcus horikoshii [TaxId:53953] [141850] (3 PDB entries)
      Uniprot O58677 134-424
    7. 2088536Species Rhodospirillum rubrum [TaxId:1085] [51657] (5 PDB entries)
    8. 2088547Species Rice (Oryza sativa) [TaxId:4530] [117390] (3 PDB entries)
      Uniprot P12089
    9. 2088560Species Spinach (Spinacia oleracea) [TaxId:3562] [51653] (11 PDB entries)
    10. 2088617Species Synechococcus sp., strain pcc 6301 [TaxId:1131] [51656] (2 PDB entries)
    11. 2088634Species Thermococcus kodakaraensis [TaxId:311400] [69404] (2 PDB entries)
    12. 2088650Species Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId:4097] [51652] (5 PDB entries)
  2. 2088660automated matches [226984] (8 species)
    not a true protein
    1. 2088661Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [225548] (9 PDB entries)
    2. 2088734Species Pea (Pisum sativum) [TaxId:3888] [226514] (2 PDB entries)
    3. 2088743Species Red algae (Galdieria sulphuraria) [TaxId:130081] [226525] (3 PDB entries)
    4. 2088747Species Rhodopseudomonas palustris [TaxId:258594] [257017] (2 PDB entries)
    5. 2088760Species Thermosynechococcus elongatus [TaxId:197221] [226344] (2 PDB entries)
    6. 2284490Species Rhodopseudomonas palustris [TaxId:1076] [327791] (6 PDB entries)
    7. 2285583Species Rhodopseudomonas palustris [TaxId:1] [328884] (1 PDB entry)
    8. 2285613Species Rhodospirillum rubrum [TaxId:1085] [328914] (1 PDB entry)

More info for Family c.1.14.1: RuBisCo, large subunit, C-terminal domain

Timeline for Family c.1.14.1: RuBisCo, large subunit, C-terminal domain: