Lineage for Family c.1.11.2: D-glucarate dehydratase-like

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2086988Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families) (S)
    binds metal ion (magnesium or manganese) in conserved site inside barrel
    N-terminal alpha+beta domain is common to this superfamily
  5. 2087095Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 protein domains)

Protein Domains:

  1. 2087096beta-Methylaspartase [69400] (2 species)
    1. 2087097Species Citrobacter amalonaticus [TaxId:35703] [69402] (2 PDB entries)
    2. 2087102Species Clostridium tetanomorphum [TaxId:1553] [69401] (2 PDB entries)
  2. 2087107Chlormuconate cycloisomerase [51619] (2 species)
    1. 2087108Species Alcaligenes eutrophus [TaxId:106590] [51620] (1 PDB entry)
    2. 2087110Species Pseudomonas sp. p51 [TaxId:65067] [102096] (1 PDB entry)
  3. 2087112D-glucarate dehydratase [51610] (2 species)
    1. 2087113Species Escherichia coli [TaxId:562] [51612] (7 PDB entries)
    2. 2087138Species Pseudomonas putida [TaxId:303] [51611] (1 PDB entry)
  4. 2087140D-mannonate dehydratase [267664] (1 species)
  5. 2087146Hypothetical protein Atu3453 [102097] (1 species)
  6. 2087149Hypothetical protein Bll6730 [117384] (1 species)
  7. 2087153Hypothetical protein YitF [141844] (1 species)
  8. 2087165L-Ala-D/L-Glu epimerase [69397] (2 species)
    1. 2087166Species Bacillus subtilis [TaxId:1423] [69399] (2 PDB entries)
      Uniprot O34508
    2. 2087179Species Escherichia coli [TaxId:562] [69398] (1 PDB entry)
  9. 2087181Mandelate racemase [51617] (3 species)
    1. 2087182Species Clostridium beijerinckii [TaxId:290402] [267745] (2 PDB entries)
    2. 2087187Species Dickeya dadantii [TaxId:579405] [267743] (1 PDB entry)
    3. 2087196Species Pseudomonas putida [TaxId:303] [51618] (6 PDB entries)
  10. 2087203Muconate-lactonizing enzyme [51615] (1 species)
  11. 2087216N-acylamino acid racemase [110372] (4 species)
    1. 2087217Species Amycolatopsis sp. [TaxId:37632] [110373] (4 PDB entries)
      Uniprot Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
    2. 2087234Species Deinococcus radiodurans [TaxId:1299] [110374] (5 PDB entries)
      Uniprot Q9RYA6
    3. 2087255Species Enterococcus faecalis [TaxId:1351] [117382] (1 PDB entry)
      Uniprot Q838J7; EF0450; protein assignment by sequence similarity
    4. 2087258Species Listeria innocua [TaxId:1642] [117383] (1 PDB entry)
      Uniprot Q927X3; Lin2664; protein assignment by sequence similarity
  12. 2087261O-succinylbenzoate synthase [51613] (1 species)
  13. 2087270Putative dehydratase protein STM2273 [141846] (2 species)
    1. 2087271Species Salmonella enterica [TaxId:90371] [226347] (1 PDB entry)
    2. 2087280Species Salmonella typhimurium [TaxId:90371] [141847] (1 PDB entry)
      Uniprot Q8ZNH1 123-400
  14. 2087283RTS beta protein [117386] (1 species)
  15. 2087289automated matches [226997] (13 species)
    not a true protein
    1. 2087290Species Acidaminococcus sp. [TaxId:563191] [234735] (1 PDB entry)
    2. 2087293Species Actinobacillus succinogenes [TaxId:339671] [226437] (1 PDB entry)
    3. 2087298Species Agrobacterium tumefaciens [TaxId:176299] [226506] (6 PDB entries)
    4. Species Bradyrhizobium japonicum [TaxId:375] [255123] (2 PDB entries)
    5. 2087331Species Cupriavidus necator [TaxId:106590] [311123] (1 PDB entry)
    6. 2087334Species Escherichia coli [TaxId:444449] [233282] (2 PDB entries)
    7. 2087340Species Pantoea ananatis [TaxId:706191] [267884] (1 PDB entry)
    8. 2087343Species Pectobacterium carotovorum [TaxId:561230] [267927] (1 PDB entry)
    9. 2087348Species Pseudomonas putida [TaxId:303] [228631] (6 PDB entries)
    10. 2087362Species Salmonella enterica [TaxId:550537] [267890] (3 PDB entries)
    11. 2087377Species Salmonella typhimurium [TaxId:602] [225624] (1 PDB entry)
    12. 2087379Species Vibrionales bacterium [TaxId:391574] [267878] (2 PDB entries)
    13. 2282906Species Amycolatopsis sp. [TaxId:37632] [326207] (5 PDB entries)

More info for Family c.1.11.2: D-glucarate dehydratase-like

Timeline for Family c.1.11.2: D-glucarate dehydratase-like: