SCOPe 2.08: Protein: Bacterial alpha-amylase

Lineage for Protein: Bacterial alpha-amylase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein Bacterial alpha-amylase [51447] (10 species)

Species:

Bacillus halmapalus [TaxId:79882] [141768] (1 PDB entry)
Uniprot P19571 38-431
- Domain for 1w9x:
  - Domain d1w9xa2: 1w9x A:5-398 [120800]
    Other proteins in same PDB: d1w9xa1
    complexed with ca, na
Bacillus licheniformis [TaxId:1402] [51448] (9 PDB entries)
1. Domain for 1bli:
  - Domain d1blia2: 1bli A:3-393 [28702]
    Other proteins in same PDB: d1blia1
    complexed with ca, na
2. Domain for 1bpl:
  - Domain d1bpl.1: 1bpl A:,B:193-393 [28703]
    Other proteins in same PDB: d1bplb1
3. Domain for 1ob0:
  - Domain d1ob0a2: 1ob0 A:3-393 [81257]
    Other proteins in same PDB: d1ob0a1
    complexed with ca, na
4. Domain for 1vjs:
  - Domain d1vjsa2: 1vjs A:3-393 [28701]
    Other proteins in same PDB: d1vjsa1
5. Domain for 6toy:
  - Domain d6toya1: 6toy A:3-393 [392015]
    Other proteins in same PDB: d6toya2
    automated match to d1hvxa2
    complexed with acy, ca, fmt, mli, na
6. Domain for 6toz:
  - Domain d6toza1: 6toz A:3-393 [392029]
    Other proteins in same PDB: d6toza2
    automated match to d1hvxa2
    complexed with ac1, acy, ca, glc, na
7. Domain for 6tp0:
  - Domain d6tp0a1: 6tp0 A:3-393 [391980]
    Other proteins in same PDB: d6tp0a2
    automated match to d1hvxa2
    complexed with acy, ca, glc, mli, na
8. Domain for 6tp1:
  - Domain d6tp1a1: 6tp1 A:3-393 [392007]
    Other proteins in same PDB: d6tp1a2
    automated match to d1hvxa2
    complexed with acy, ca, glc, mli, na
9. Domain for 6tp2:
  - Domain d6tp2a1: 6tp2 A:3-393 [392025]
    Other proteins in same PDB: d6tp2a2
    automated match to d1hvxa2
    complexed with ca, glc, mli, na
Bacillus sp. 707 [TaxId:1416] [117366] (4 PDB entries)
Uniprot P19571 38-518
1. Domain for 1wp6:
  - Domain d1wp6a2: 1wp6 A:5-398 [114782]
    Other proteins in same PDB: d1wp6a1
    complexed with ca, na, po4, trs
2. Domain for 1wpc:
  - Domain d1wpca2: 1wpc A:5-398 [114800]
    Other proteins in same PDB: d1wpca1
    complexed with aci, ca, na
3. Domain for 2d3l:
  - Domain d2d3la2: 2d3l A:5-398 [131211]
    Other proteins in same PDB: d2d3la1
    complexed with ca, glc, na
4. Domain for 2d3n:
  - Domain d2d3na2: 2d3n A:5-398 [131213]
    Other proteins in same PDB: d2d3na1
    automated match to d1wpca2
    complexed with ca, glc, na
Bacillus sp., ksm-k38 [TaxId:1409] [89463] (6 PDB entries)
1. Domain for 1ud2:
  - Domain d1ud2a2: 1ud2 A:1-390 [88470]
    Other proteins in same PDB: d1ud2a1
    complexed with gol, na
2. Domain for 1ud3:
  - Domain d1ud3a2: 1ud3 A:1-390 [88472]
    Other proteins in same PDB: d1ud3a1
    complexed with na; mutant
3. Domain for 1ud4:
  - Domain d1ud4a2: 1ud4 A:1-390 [88474]
    Other proteins in same PDB: d1ud4a1
    complexed with na
4. Domain for 1ud5:
  - Domain d1ud5a2: 1ud5 A:1-390 [88476]
    Other proteins in same PDB: d1ud5a1
    complexed with na, rb
5. Domain for 1ud6:
  - Domain d1ud6a2: 1ud6 A:1-390 [88478]
    Other proteins in same PDB: d1ud6a1
    complexed with k
6. Domain for 1ud8:
  - Domain d1ud8a2: 1ud8 A:1-390 [88480]
    Other proteins in same PDB: d1ud8a1
    complexed with na
Bacillus stearothermophilus [TaxId:1422] [51451] (1 PDB entry)
- Domain for 1hvx:
  - Domain d1hvxa2: 1hvx A:1-393 [28708]
    Other proteins in same PDB: d1hvxa1
    complexed with ca, na
Bacillus subtilis [TaxId:1423] [51450] (2 PDB entries)
Uniprot P00691
1. Domain for 1bag:
  - Domain d1baga2: 1bag A:1-347 [28707]
    Other proteins in same PDB: d1baga1
    complexed with ca
2. Domain for 1ua7:
  - Domain d1ua7a2: 1ua7 A:4-347 [107760]
    Other proteins in same PDB: d1ua7a1
    complexed with aci, ca
Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId:1390] [63903] (4 PDB entries)
the N-terminal 300 residues are from B. amyloliquefaciens
1. Domain for 1e3x:
  - Domain d1e3xa2: 1e3x A:1-393 [59212]
    Other proteins in same PDB: d1e3xa1
    complexed with ca, na
2. Domain for 1e3z:
  - Domain d1e3za2: 1e3z A:1-393 [59214]
    Other proteins in same PDB: d1e3za1
    complexed with aci, ca, na
3. Domain for 1e40:
  - Domain d1e40a2: 1e40 A:1-393 [59216]
    Other proteins in same PDB: d1e40a1
    complexed with ca, na, trs
4. Domain for 1e43:
  - Domain d1e43a2: 1e43 A:1-393 [59218]
    Other proteins in same PDB: d1e43a1
    complexed with ca, na
Halothermothrix orenii [TaxId:31909] [141767] (1 PDB entry)
Uniprot Q8GPL8 28-436
- Domain for 1wza:
  - Domain d1wzaa2: 1wza A:28-436 [121490]
    Other proteins in same PDB: d1wzaa1
    complexed with ca
Pseudoalteromonas haloplanktis [TaxId:228] [51449] (9 PDB entries)
1. Domain for 1aqh:
  - Domain d1aqha2: 1aqh A:1-354 [28705]
    Other proteins in same PDB: d1aqha1
    complexed with ca, cl
2. Domain for 1aqm:
  - Domain d1aqma2: 1aqm A:1-354 [28704]
    Other proteins in same PDB: d1aqma1
    complexed with ca, cl, trs
3. Domain for 1b0i:
  - Domain d1b0ia2: 1b0i A:1-354 [28706]
    Other proteins in same PDB: d1b0ia1
    complexed with ca, cl
4. Domain for 1g94:
  - Domain d1g94a2: 1g94 A:1-354 [65170]
    Other proteins in same PDB: d1g94a1
    complexed with ca, cl, trs
5. Domain for 1g9h:
  - Domain d1g9ha2: 1g9h A:1-354 [70163]
    Other proteins in same PDB: d1g9ha1
    complexed with ca, cl, trs
6. Domain for 1jd7:
  - Domain d1jd7a2: 1jd7 A:1-354 [77105]
    Other proteins in same PDB: d1jd7a1
    complexed with ca, cl; mutant
7. Domain for 1jd9:
  - Domain d1jd9a2: 1jd9 A:1-354 [77107]
    Other proteins in same PDB: d1jd9a1
    complexed with ca; mutant
8. Domain for 1kxh:
  - Domain d1kxha2: 1kxh A:1-354 [73152]
    Other proteins in same PDB: d1kxha1
    complexed with ca, cl; mutant
9. Domain for 1l0p:
  - Domain d1l0pa2: 1l0p A:1-354 [73407]
    Other proteins in same PDB: d1l0pa1
    complexed with ca, no3
Pyrococcus woesei [TaxId:2262] [89464] (3 PDB entries)
1. Domain for 1mwo:
  - Domain d1mwoa2: 1mwo A:1-361 [85160]
    Other proteins in same PDB: d1mwoa1
    complexed with ca, zn
    has additional insertions and/or extensions that are not grouped together
2. Domain for 1mxd:
  - Domain d1mxda2: 1mxd A:1-361 [85192]
    Other proteins in same PDB: d1mxda1
    complexed with act, ca, glc, zn
    has additional insertions and/or extensions that are not grouped together
3. Domain for 1mxg:
  - Domain d1mxga2: 1mxg A:1-361 [85194]
    Other proteins in same PDB: d1mxga1
    complexed with ca, eoh, ete, mg, trs, zn
    has additional insertions and/or extensions that are not grouped together

More info for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain:

Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein Bacterial alpha-amylase from c.1.8.1: alpha-Amylases, N-terminal domain
Protein Bacterial alpha-amylase from c.1.8.1: Amylase, catalytic domain appears in SCOPe 2.07