Lineage for Family b.47.1.4: Viral cysteine protease of trypsin fold

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2387558Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2387559Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2389935Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 proteins)

Proteins:

  1. 23899362A cysteine proteinase [50607] (1 species)
  2. 23899403C cysteine protease (picornain 3C) [50604] (9 species)
    1. 2389941Species Foot-and-mouth disease virus [TaxId:12110] [159189] (2 PDB entries)
      Uniprot P49303 1657-1755! Uniprot P49303 1657-1857
    2. 2389944Species Human coxsackievirus a16 [TaxId:31704] [189721] (3 PDB entries)
    3. 2389948Species Human enterovirus 71 [TaxId:39054] [189720] (3 PDB entries)
    4. 2389963Species Human enterovirus b [TaxId:138949] [189732] (3 PDB entries)
    5. 2389970Species Human hepatitis a virus hu/northern africa/mbb/1978 [TaxId:12100] [186929] (2 PDB entries)
    6. 2389973Species Human hepatitis A virus [TaxId:208726] [50606] (5 PDB entries)
    7. 2389983Species Human poliovirus 1 Mahoney [TaxId:12081] [74978] (2 PDB entries)
    8. 2389988Species Human rhinovirus 2 [TaxId:12130] [50605] (5 PDB entries)
    9. 2389992Species Human rhinovirus sp. [TaxId:169066] [189940] (1 PDB entry)
  3. 2389994Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) [74979] (6 species)
    contains an extra alpha-helical domain
    1. 2389995Species Human coronavirus 229E [TaxId:11137] [89348] (2 PDB entries)
    2. 2390000Species Human coronavirus [TaxId:443239] [188597] (4 PDB entries)
    3. 2390008Species Porcine transmissible gastroenteritis coronavirus [TaxId:11151] [193539] (1 PDB entry)
    4. 2390013Species Sars coronavirus sin2774 [TaxId:235410] [187498] (2 PDB entries)
    5. 2390016Species SARS coronavirus [TaxId:227859] [89349] (73 PDB entries)
    6. 2390114Species Transmissible gastroenteritis virus [TaxId:11149] [74980] (3 PDB entries)
  4. 2390129Norwalk-like virus processing protease [310746] (2 species)
    Pfam PF05416; 3C-like according to PubMed 16227288
    1. 2390130Species Chiba virus [TaxId:99565] [310999] (1 PDB entry)
    2. 2390135Species Norwalk virus [TaxId:11983] [311000] (2 PDB entries)
  5. 2390138automated matches [190384] (20 species)
    not a true protein
    1. 2390139Species Coxsackievirus b3 [TaxId:103903] [188647] (2 PDB entries)
    2. 2390141Species Echovirus 1 (strain human/egypt/farouk/1951) [TaxId:103908] [323603] (1 PDB entry)
    3. 2390144Species Enterovirus a71 [TaxId:39054] [279546] (12 PDB entries)
    4. 2390165Species Foot-and-mouth disease virus (strain a10-61) [TaxId:12112] [187901] (1 PDB entry)
    5. 2390167Species Foot-and-mouth disease virus [TaxId:12110] [187460] (1 PDB entry)
    6. 2390169Species Foot-and-mouth disease virus [TaxId:12112] [189099] (2 PDB entries)
    7. 2390176Species Human coxsackievirus B3 [TaxId:12072] [188738] (7 PDB entries)
    8. 2390186Species Human coxsackievirus [TaxId:12072] [188739] (11 PDB entries)
    9. 2390200Species Human enterovirus [TaxId:42789] [196804] (9 PDB entries)
    10. 2390210Species Human poliovirus 1 [TaxId:12081] [193776] (1 PDB entry)
    11. 2390212Species Human sars coronavirus [TaxId:227859] [187234] (2 PDB entries)
    12. 2390217Species Murine norovirus 1 [TaxId:223997] [311357] (5 PDB entries)
    13. 2390229Species Norovirus hu/1968/us [TaxId:524364] [311386] (1 PDB entry)
    14. 2390231Species Norwalk virus (strain gi/human/united states/norwalk/1968) [TaxId:524364] [311468] (3 PDB entries)
    15. 2390236Species Norwalk virus [TaxId:37129] [311216] (1 PDB entry)
    16. 2390239Species Norwalk virus [TaxId:524364] [313606] (11 PDB entries)
    17. 2390257Species Porcine epidemic diarrhea virus [TaxId:28295] [311580] (2 PDB entries)
    18. 2390262Species Rhinovirus c [TaxId:463676] [255484] (2 PDB entries)
    19. 2390264Species SARS coronavirus [TaxId:227859] [187411] (13 PDB entries)
    20. 3058131Species Norovirus gii.4 [TaxId:489821] [358193] (1 PDB entry)

More info for Family b.47.1.4: Viral cysteine protease of trypsin fold

Timeline for Family b.47.1.4: Viral cysteine protease of trypsin fold: