SCOPe 2.07: Family b.47.1.1: Prokaryotic proteases

Lineage for Family b.47.1.1: Prokaryotic proteases

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
   barrel, closed; n=6, S=8; greek-key
   duplication: consists of two domains of the same fold

4. Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families)

5. Family b.47.1.1: Prokaryotic proteases [50495] (16 proteins)

Proteins:

1. Achromobacter protease [50496] (1 species)

   • Species Achromobacter lyticus, strain m497-1 [TaxId:224] [50497] (3 PDB entries)

2. alpha-Lytic protease [50498] (1 species)

   • Species Lysobacter enzymogenes, 495 [TaxId:69] [50499] (46 PDB entries)

3. Epidermolytic (exfoliative) toxin A [50510] (1 species)
   probable glutamic acid-specific protease

   • Species Staphylococcus aureus [TaxId:1280] [50511] (4 PDB entries)

4. Exfoliative toxin B [50512] (1 species)

   • Species Staphylococcus aureus [TaxId:1280] [50513] (2 PDB entries)

5. Glutamic acid-specific protease [50502] (1 species)

   • Species Streptomyces griseus [TaxId:1911] [50503] (1 PDB entry)

6. Glutamyl endopeptidase [101811] (1 species)

   • Species Bacillus intermedius [TaxId:1400] [101812] (2 PDB entries)

7. Mitochondrial serine protease HtrA2, catalytic domain [74971] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [74972] (1 PDB entry)

8. Protease A [50500] (1 species)

   • Species Streptomyces griseus, strain k1 [TaxId:1911] [50501] (5 PDB entries)

9. Protease B [50508] (1 species)

   • Species Streptomyces griseus, strain k1 [TaxId:1911] [50509] (20 PDB entries)
     Streptogrisin B

10. Protease Do (DegP, HtrA), catalytic domain [74969] (2 species)

    1. Species Escherichia coli [TaxId:562] [74970] (4 PDB entries)

    2. Species Thermotoga maritima [TaxId:2336] [89339] (1 PDB entry)

11. Protease PepD [141383] (1 species)

    • Species Mycobacterium tuberculosis [TaxId:1773] [141384] (2 PDB entries)
      Uniprot O53896 154-374
      Rv0983

12. Serine proteinase [50506] (1 species)

    • Species Streptomyces fradiae [TaxId:1906] [50507] (1 PDB entry)

13. Stress sensor protease DegS, catalytic domain [110236] (1 species)

    • Species Escherichia coli [TaxId:562] [110237] (12 PDB entries)
      Uniprot P31137 37-354 ! Uniprot P31137

14. Trypsin [50504] (1 species)

    • Species Streptomyces griseus, strain k1 [TaxId:1911] [50505] (7 PDB entries)

15. V8 protease [101809] (1 species)
    glutamic acid-specific protease

    • Species Staphylococcus aureus [TaxId:1280] [101810] (3 PDB entries)
      Uniprot P04188 69-284

16. automated matches [190306] (9 species)
    not a true protein

    1. Species Escherichia coli K-12 [TaxId:83333] [225952] (8 PDB entries)

    2. Species Human (Homo sapiens) [TaxId:9606] [322167] (8 PDB entries)

    3. Species Lysobacter enzymogenes [TaxId:69] [189631] (4 PDB entries)

    4. Species Lysobacter sp. [TaxId:186334] [346641] (1 PDB entry)

    5. Species Staphylococcus aureus [TaxId:1280] [316235] (1 PDB entry)

    6. Species Staphylococcus epidermidis [TaxId:176280] [227720] (6 PDB entries)

    7. Species Staphylococcus pseudintermedius [TaxId:283734] [369806] (1 PDB entry)

    8. Species Streptomyces griseus [TaxId:1911] [187119] (8 PDB entries)

    9. Species Yersinia pestis [TaxId:214092] [317139] (1 PDB entry)

More info for Family b.47.1.1: Prokaryotic proteases

Timeline for Family b.47.1.1: Prokaryotic proteases:

• Family b.47.1.1: Prokaryotic proteases first appeared (with stable ids) in SCOP 1.55
  
• Family b.47.1.1: Prokaryotic proteases appears in SCOPe 2.06
  
• Family b.47.1.1: Prokaryotic proteases appears in the current release, SCOPe 2.08