SCOP 1.67: Superfamily a.4.1: Homeodomain-like

Lineage for Superfamily a.4.1: Homeodomain-like

1. Root: SCOP 1.67

2. Class a: All alpha proteins [46456] (202 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (12 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.1: Homeodomain-like [46689] (12 families)
   consists only of helices

Families:

1. a.4.1.1: Homeodomain [46690] (22 proteins)

2. a.4.1.2: Recombinase DNA-binding domain [46728] (5 proteins)

3. a.4.1.3: Myb/SANT domain [46739] (5 proteins)

4. a.4.1.4: DNA-binding domain of human telomeric protein, hTRF1 [46745] (1 protein)

5. a.4.1.5: Paired domain [46748] (3 proteins)
   duplication: consists of two domains of this fold

6. a.4.1.6: DNA-binding domain of rap1 [46753] (1 protein)
   duplication: consist of two domains of this fold

7. a.4.1.7: Centromere-binding [46756] (2 proteins)
   duplication: tandem repeat of two similar domains

8. a.4.1.8: AraC type transcriptional activator [46759] (2 proteins)
   duplication: consists of two structural repeats bipartite HTH protein

9. a.4.1.9: Tetracyclin repressor-like, N-terminal domain [46764] (5 proteins)

10. a.4.1.11: GARP response regulators [81683] (1 protein)
    plant myb-related DNA-binding motif

11. a.4.1.12: FIS-like [100918] (4 proteins)

12. a.4.1.13: SLIDE domain [100998] (1 protein)
    myb-related probable DNA-binding motif

More info for Superfamily a.4.1: Homeodomain-like

Timeline for Superfamily a.4.1: Homeodomain-like:

• Superfamily a.4.1: Homeodomain-like first appeared (with stable ids) in SCOP 1.55
  
• Superfamily a.4.1: Homeodomain-like appears in SCOP 1.65
  
• Superfamily a.4.1: Homeodomain-like appears in SCOP 1.69
  
• Superfamily a.4.1: Homeodomain-like appears in the current release, SCOPe 2.08