Lineage for Superfamily a.4.1: Homeodomain-like

  1. Root: SCOP 1.65
  2. 275720Class a: All alpha proteins [46456] (179 folds)
  3. 277521Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (12 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 277522Superfamily a.4.1: Homeodomain-like [46689] (11 families) (S)
    consists only of helices

Families:

  1. 277523a.4.1.1: Homeodomain [46690] (21 proteins)
  2. 277636a.4.1.2: Recombinase DNA-binding domain [46728] (5 proteins)
  3. 277664a.4.1.3: Myb [46739] (4 proteins)
  4. 277701a.4.1.4: DNA-binding domain of human telomeric protein, hTRF1 [46745] (1 protein)
  5. 277707a.4.1.5: Paired domain [46748] (3 proteins)
    duplication: consists of two domains of this fold
  6. 277724a.4.1.6: DNA-binding domain of rap1 [46753] (1 protein)
    duplication: consist of two domains of this fold
  7. 277731a.4.1.7: Centromere-binding [46756] (2 proteins)
    duplication: tandem repeat of two similar domains
  8. 277741a.4.1.8: AraC type transcriptional activator [46759] (2 proteins)
    duplication: consists of two structural repeats bipartite HTH protein
  9. 277756a.4.1.9: Tetracyclin repressor-like, N-terminal domain [46764] (3 proteins)
  10. 277805a.4.1.10: Transcriptional regulator TyrR, C-terminal domain [63469] (1 protein)
  11. 277809a.4.1.11: GARP response regulators [81683] (1 protein)
    plant myb-related DNA binding motif

More info for Superfamily a.4.1: Homeodomain-like

Timeline for Superfamily a.4.1: Homeodomain-like: