Lineage for Family a.3.1.1: monodomain cytochrome c

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2303644Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 2303645Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 2303646Family a.3.1.1: monodomain cytochrome c [46627] (16 proteins)

Proteins:

  1. 2303647Cytochrome c'' [68950] (1 species)
    close homologue of SHP
  2. 2303654Cytochrome c-L (MoxG) [109645] (1 species)
  3. 2303657Cytochrome c2 [46650] (8 species)
    1. 2303658Species Paracoccus denitrificans [TaxId:266] [46657] (2 PDB entries)
    2. 2303661Species Rhodobacter capsulatus [TaxId:1061] [46652] (3 PDB entries)
      Uniprot P00094
    3. 2303667Species Rhodobacter sphaeroides [TaxId:1063] [46653] (5 PDB entries)
    4. 2303675Species Rhodopila globiformis [TaxId:1071] [46656] (1 PDB entry)
    5. 2303678Species Rhodopseudomonas palustris [TaxId:1076] [46655] (4 PDB entries)
    6. 2303689Species Rhodopseudomonas viridis [TaxId:1079] [46654] (3 PDB entries)
    7. 2303693Species Rhodospirillum centenum [TaxId:34018] [68947] (1 PDB entry)
    8. 2303695Species Rhodospirillum rubrum [TaxId:1085] [46651] (2 PDB entries)
  4. 2303698Cytochrome c5 [46658] (1 species)
  5. 2303701Cytochrome c550 [100991] (3 species)
    1. 2303702Species Thermosynechococcus elongatus [TaxId:146786] [100992] (1 PDB entry)
    2. 2303704Species Thermosynechococcus elongatus [TaxId:197221] [338583] (1 PDB entry)
    3. 2303706Species Thermosynechococcus vulcanus [TaxId:32053] [259629] (6 PDB entries)
  6. 2303713Cytochrome c551 [46660] (5 species)
    1. 2303714Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [46664] (1 PDB entry)
    2. 2303716Species Paracoccus denitrificans [TaxId:266] [46663] (5 PDB entries)
    3. 2303734Species Pseudomonas aeruginosa [TaxId:287] [46662] (4 PDB entries)
    4. 2303739Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [271783] (3 PDB entries)
    5. 2303744Species Pseudomonas stutzeri [TaxId:316] [46661] (3 PDB entries)
  7. 2303748Cytochrome c552 [46636] (6 species)
    1. 2303749Species Hydrogenobacter thermophilus [TaxId:940] [46640] (9 PDB entries)
    2. 2303766Species Nitrosomonas europaea [TaxId:228410] [224843] (1 PDB entry)
    3. 2303768Species Nitrosomonas europaea [TaxId:915] [46641] (3 PDB entries)
    4. 2303789Species Paracoccus denitrificans [TaxId:266] [46639] (5 PDB entries)
    5. 2303801Species Pseudomonas nautica [TaxId:2743] [46638] (1 PDB entry)
    6. 2303810Species Thermus thermophilus [TaxId:274] [46637] (7 PDB entries)
      Uniprot P04164
  8. 2303819Cytochrome c6 (synonym: cytochrome c553) [46628] (10 species)
    1. 2303820Species Arthrospira maxima [TaxId:129910] [63457] (2 PDB entries)
    2. 2303830Species Bacillus pasteurii [TaxId:1474] [46629] (5 PDB entries)
    3. 2303836Species Desulfovibrio desulfuricans [TaxId:876] [46632] (1 PDB entry)
    4. 2303838Species Desulfovibrio vulgaris, different strains [TaxId:881] [46631] (2 PDB entries)
    5. 2303841Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [46633] (2 PDB entries)
    6. 2303844Species Green alga (Cladophora glomerata) [TaxId:162068] [81674] (1 PDB entry)
    7. 2303846Species Green alga (Scenedesmus obliquus) [TaxId:3088] [46635] (2 PDB entries)
    8. 2303850Species Monoraphidium braunii [TaxId:34112] [46630] (3 PDB entries)
    9. 2303854Species Red alga (Porphyra yezoensis) [TaxId:2788] [63458] (1 PDB entry)
    10. 2303856Species Synechococcus elongatus [TaxId:32046] [46634] (1 PDB entry)
  9. 2303858Cytochrome ch [46648] (1 species)
  10. 2303863Mitochondrial cytochrome c [46642] (7 species)
    1. 2303864Species Ateles sp. [TaxId:9511] [313555] (1 PDB entry)
    2. 2303867Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [46643] (78 PDB entries)
      Uniprot P00044
    3. 2303968Species Bluefin tuna (Thunnus thynnus) [TaxId:8237] [46646] (5 PDB entries)
      identical sequence to Thunnus alalunga, TaxId: 8235
    4. 2303978Species Bonito (Katsuwonus pelamis) [TaxId:8226] [46647] (1 PDB entry)
    5. 2303981Species Horse (Equus caballus) [TaxId:9796] [46644] (26 PDB entries)
      Uniprot P00004
    6. 2304027Species Human (Homo sapiens) [TaxId:9606] [109644] (10 PDB entries)
      Uniprot P99999
    7. 2304048Species Rice embryos (Oryza sativa) [TaxId:4530] [46645] (1 PDB entry)
  11. 2304050Mono-heme c-type cytochrome ScyA [68948] (1 species)
  12. 2304054Mono-heme c-type cytochrome SoxX [81675] (1 species)
  13. 2304066p-Cresol methylhydroxylase, cytochrome c subunit [46669] (1 species)
    the other subunit is a flavoprotein
  14. 2304072Photosystem II associated cytochrome c549 [63459] (2 species)
    1. 2304073Species Arthrospira maxima [TaxId:129910] [63461] (1 PDB entry)
    2. 2304076Species Synechocystis sp. PCC 6803 [TaxId:1148] [63460] (1 PDB entry)
  15. 2304078SHP, an oxygen binding cytochrome c [46667] (1 species)
  16. 2304092automated matches [190113] (16 species)
    not a true protein
    1. 2304093Species Cow (Bos taurus) [TaxId:9913] [187444] (2 PDB entries)
    2. 2304095Species Crithidia fasciculata [TaxId:5656] [189994] (2 PDB entries)
    3. 2304102Species Hizikia fusiformis [TaxId:74103] [188620] (1 PDB entry)
    4. 2304109Species Leishmania major [TaxId:5664] [194459] (2 PDB entries)
    5. 2304112Species Mouse (Mus musculus) [TaxId:10090] [187404] (1 PDB entry)
    6. 2304114Species Norway rat (Rattus norvegicus) [TaxId:10116] [322473] (3 PDB entries)
    7. 2304127Species Paracoccus versutus [TaxId:34007] [187457] (3 PDB entries)
    8. 2304131Species Phaeodactylum tricornutum [TaxId:2850] [188813] (1 PDB entry)
    9. 2304133Species Phormidium laminosum [TaxId:32059] [187369] (2 PDB entries)
    10. 2304137Species Pseudomonas aeruginosa [TaxId:287] [187678] (1 PDB entry)
    11. 2304140Species Pseudomonas putida [TaxId:303] [186836] (1 PDB entry)
    12. 2304143Species Pseudomonas stutzeri [TaxId:96564] [255233] (1 PDB entry)
    13. 2304145Species Thermosynechococcus elongatus [TaxId:197221] [260557] (1 PDB entry)
    14. 2304147Species Thermosynechococcus elongatus [TaxId:32046] [188751] (3 PDB entries)
    15. 2304151Species Thermosynechococcus vulcanus [TaxId:32053] [189921] (1 PDB entry)
    16. 3049896Species Pichia membranifaciens [TaxId:4926] [349958] (1 PDB entry)

More info for Family a.3.1.1: monodomain cytochrome c

Timeline for Family a.3.1.1: monodomain cytochrome c: