SCOPe 2.08: Domain d7rk1c1: 7rk1 C:2-243

Lineage for d7rk1c1 (7rk1 C:2-243)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
   sandwich; 7 strands in 2 sheets; greek-key
   some members of the fold have additional strands

4. Superfamily b.1.1: Immunoglobulin [48726] (5 families)

5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)

6. Protein automated matches [190119] (24 species)
   not a true protein

7. Species Mouse (Mus musculus) [TaxId:10090] [186842] (622 PDB entries)

8. Domain d7rk1c1: 7rk1 C:2-243 [422244]
   Other proteins in same PDB: d7rk1c2
   automated match to d4lash_

Details for d7rk1c1

PDB Entry: 7rk1, 2.05 Å

PDB Description: crystal structure of the human astrovirus serotype 8 capsid spike in complex with scfv 3e8, an astrovirus-neutralizing antibody, at 2.05-a resolution

PDB Compounds: (C:) scFv 3E8

SCOPe Domain Sequences for d7rk1c1:

Sequence, based on SEQRES records:

>d7rk1c1 b.1.1.1 (C:2-243) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
vqlqesgpglvkpsqslsltcsvtgysitsgyywnwirqfpgnklewmgyisydgsnnyn
pslknrisitrdtsknqfflklnsvttedtatyycatfydgydywgqgttltvssggsgg
ggsggggsggggsdivmtqshkfmstsvgdrvsitckasqdvstavawyqqkpgqspkll
iywastrhtgvpdrftgsgsgtdytltissvqaedlalyycqqhystpftfgsgtkleik
ra

Sequence, based on observed residues (ATOM records):

>d7rk1c1 b.1.1.1 (C:2-243) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
vqlqesgpglvkpsqslsltcsvtgysitsgyywnwirqfpgnklewmgyisydgsnnyn
pslknrisitrdtsknqfflklnsvttedtatyycatfydgydywgqgttltvssdivmt
qshkfmstsvgdrvsitckasqdvstavawyqqkpgqspklliywastrhtgvpdrftgs
gsgtdytltissvqaedlalyycqqhystpftfgsgtkleikra

Timeline for d7rk1c1:

• d7rk1c1 is new in SCOPe 2.08-stable