SCOPe 2.07: Domain d5s39b1: 5s39 B:3-169

Lineage for d5s39b1 (5s39 B:3-169)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.50: Macro domain-like [52948] (1 superfamily)
   3 layers: a/b/a; mixed beta-sheet of 6 strands, order 165243, strand 3 is antiparallel to the rest

4. Superfamily c.50.1: Macro domain-like [52949] (4 families)

5. Family c.50.1.2: Macro domain [89724] (7 proteins)
   found in different proteins, including macro-H2a histone and the Appr-1"-p processing enzyme

6. Protein automated matches [190472] (8 species)
   not a true protein

7. Species SARS coronavirus [TaxId:227859] [187695] (257 PDB entries)

8. Domain d5s39b1: 5s39 B:3-169 [400287]
   Other proteins in same PDB: d5s39b2
   automated match to d2favb_
   complexed with dms, w0y

Details for d5s39b1

PDB Entry: 5s39, 1.16 Å

PDB Description: pandda analysis group deposition -- crystal structure of sars-cov-2 nsp3 macrodomain in complex with z165170770

PDB Compounds: (B:) non-structural protein 3

SCOPe Domain Sequences for d5s39b1:

Sequence; same for both SEQRES and ATOM records:

>d5s39b1 c.50.1.2 (B:3-169) automated matches {SARS coronavirus [TaxId: 227859]}
vnsfsgylkltdnvyiknadiveeakkvkptvvvnaanvylkhgggvagalnkatnnamq
vesddyiatngplkvggscvlsghnlakhclhvvgpnvnkgediqllksayenfnqhevl
lapllsagifgadpihslrvcvdtvrtnvylavfdknlydklvssfl

Timeline for d5s39b1:

• d5s39b1 is new in SCOPe 2.07-stable
  
• d5s39b1 appears in the current release, SCOPe 2.08