SCOPe 2.07: Domain d6vuea1: 6vue A:53-846

Lineage for d6vuea1 (6vue A:53-846)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
   contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel

4. Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families)
   duplication: the N- and C-terminal halves have similar topologies

5. Family c.7.1.0: automated matches [275322] (1 protein)
   not a true family

6. Protein automated matches [275324] (7 species)
   not a true protein

7. Species Desulfovibrio alaskensis [TaxId:207559] [323257] (7 PDB entries)

8. Domain d6vuea1: 6vue A:53-846 [395966]
   Other proteins in same PDB: d6vuea2, d6vueb2
   automated match to d5faua_
   complexed with na, rp7

Details for d6vuea1

PDB Entry: 6vue, 2.28 Å

PDB Description: wild-type choline tma lyase in complex with 1-methyl-1,2,3,6- tetrahydropyridin-3-ol

PDB Compounds: (A:) Choline trimethylamine-lyase

SCOPe Domain Sequences for d6vuea1:

Sequence; same for both SEQRES and ATOM records:

>d6vuea1 c.7.1.0 (A:53-846) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}
gipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetap
lviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreev
fpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmld
iqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrk
aelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyrad
idsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatn
dltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmml
akgvsiedardyclmgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpd
mgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgr
dvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqil
adclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllga
sangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpe
genglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckd
vqdeiisrtmlhgf

Timeline for d6vuea1:

• d6vuea1 is new in SCOPe 2.07-stable
  
• d6vuea1 appears in the current release, SCOPe 2.08