Lineage for d6xkpb_ (6xkp B:)

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2616505Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
    core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542
  4. 2616506Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family) (S)
    automatically mapped to Pfam PF09408
  5. 2616507Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein)
    part of PfamB PB000266
  6. 2616508Protein Spike protein S1 [143589] (4 species)
  7. 2616541Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (92 PDB entries)
  8. 2616616Domain d6xkpb_: 6xkp B: [393356]
    Other proteins in same PDB: d6xkpl1, d6xkpl2, d6xkpn1, d6xkpn2
    automated match to d2dd8s1
    complexed with nag, so4

Details for d6xkpb_

PDB Entry: 6xkp (more details), 2.72 Å

PDB Description: crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody cv07-270
PDB Compounds: (B:) Spike protein S1

SCOPe Domain Sequences for d6xkpb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6xkpb_ d.318.1.1 (B:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgp

SCOPe Domain Coordinates for d6xkpb_:

Click to download the PDB-style file with coordinates for d6xkpb_.
(The format of our PDB-style files is described here.)

Timeline for d6xkpb_: