Lineage for d6xkqa_ (6xkq A:)

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2616505Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
    core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542
  4. 2616506Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family) (S)
    automatically mapped to Pfam PF09408
  5. 2616507Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein)
    part of PfamB PB000266
  6. 2616508Protein Spike protein S1 [143589] (4 species)
  7. 2616541Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (92 PDB entries)
  8. 2616603Domain d6xkqa_: 6xkq A: [393309]
    Other proteins in same PDB: d6xkql1, d6xkql2
    automated match to d2dd8s1
    complexed with nag

Details for d6xkqa_

PDB Entry: 6xkq (more details), 2.55 Å

PDB Description: crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody cv07-250
PDB Compounds: (A:) Spike protein S1

SCOPe Domain Sequences for d6xkqa_:

Sequence, based on SEQRES records: (download)

>d6xkqa_ d.318.1.1 (A:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
fgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvya
dsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfr
ksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvls

Sequence, based on observed residues (ATOM records): (download)

>d6xkqa_ d.318.1.1 (A:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
fgevfnatrfasvyawnrkvlynstfkcygvadsfvirgdevrqiapgqtgkiadynykl
pddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngveg
fncyfplqsygfqptngvgyqpyrvvvls

SCOPe Domain Coordinates for d6xkqa_:

Click to download the PDB-style file with coordinates for d6xkqa_.
(The format of our PDB-style files is described here.)

Timeline for d6xkqa_: