Lineage for d6y6ah_ (6y6a H:)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2430785Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2432198Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families) (S)
  5. 2432199Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)
  6. 2432269Protein automated matches [191200] (13 species)
    not a true protein
  7. 2432270Species Finch polyomavirus [TaxId:349564] [389100] (1 PDB entry)
  8. 2432278Domain d6y6ah_: 6y6a H: [389188]
    automated match to d4mbzj_
    complexed with cl, mg, sia

Details for d6y6ah_

PDB Entry: 6y6a (more details), 2.65 Å

PDB Description: structure of finch polyomavirus vp1 in complex with 2-o-methyl-5-n- acetyl-alpha-d-neuraminic acid
PDB Compounds: (H:) Capsid protein VP1

SCOPe Domain Sequences for d6y6ah_:

Sequence, based on SEQRES records: (download)

>d6y6ah_ b.121.6.1 (H:) automated matches {Finch polyomavirus [TaxId: 349564]}
ievldvktgpdstttieaylnprvgqnwgfsteitvasngyndaphlteipcyssarisl
pllneditsptllmweavsvktevvgissmlnmhsyglrafggygggytiegshihffsv
ggepldlqglmqnhstqypsplvgpkkpdgttddsaqvlnpiykakldkdatypiecwcp
dpsrnensryfgsytggvetppvlsftntsttilldengvgplckgdglylssadvagtf
vqqtsqkqywrglpryfnitlrkravk

Sequence, based on observed residues (ATOM records): (download)

>d6y6ah_ b.121.6.1 (H:) automated matches {Finch polyomavirus [TaxId: 349564]}
ievldvktgpdstttieaylnprvgqnwgfsteitvasngyndaphlteipcyssarisl
pllnllmweavsvktevvgissmlnmhsyglrafggygggytiegshihffsvggepldl
qglmqnhstqypsplvgpkkpdgttddsaqvlnpiykakldkdatypiecwcpdpsrnen
sryfgsytggvetppvlsftntsttilldengvgplckgdglylssadvagtfvqqtsqk
qywrglpryfnitlrkravk

SCOPe Domain Coordinates for d6y6ah_:

Click to download the PDB-style file with coordinates for d6y6ah_.
(The format of our PDB-style files is described here.)

Timeline for d6y6ah_: