SCOPe 2.07: Domain d6vnra_: 6vnr A:

Lineage for d6vnra_ (6vnr A:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

4. Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)

5. Family c.42.1.0: automated matches [191435] (1 protein)
   not a true family

6. Protein automated matches [190626] (12 species)
   not a true protein

7. Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (53 PDB entries)

8. Domain d6vnra_: 6vnr A: [385706]
   automated match to d5g0ha_
   complexed with edo, k, r5g, zn

Details for d6vnra_

PDB Entry: 6vnr, 1.94 Å

PDB Description: crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 (cd2) complexed with bishydroxamic acid inhibitor

PDB Compounds: (A:) Hdac6 protein

SCOPe Domain Sequences for d6vnra_:

Sequence, based on SEQRES records:

>d6vnra_ c.42.1.0 (A:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
pitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelal
chsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqv
rnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqh
ifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaa
fhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliil
eggynltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfwssl

Sequence, based on observed residues (ATOM records):

>d6vnra_ c.42.1.0 (A:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
pitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelal
chsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqv
rnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqh
ifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaa
fhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliil
eggynltsisesmsmctsmllgdsppsltplktsatvsinnvlrahapfwssl

Timeline for d6vnra_:

• d6vnra_ is new in SCOPe 2.07-stable
  
• d6vnra_ appears in the current release, SCOPe 2.08