SCOPe 2.07: Domain d6nvra1: 6nvr A:1-227

Lineage for d6nvra1 (6nvr A:1-227)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (9 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.0: automated matches [191557] (1 protein)
   not a true family

6. Protein automated matches [190961] (22 species)
   not a true protein

7. Species Mycobacteroides abscessus [TaxId:36809] [380800] (1 PDB entry)

8. Domain d6nvra1: 6nvr A:1-227 [381008]
   Other proteins in same PDB: d6nvra2, d6nvrb2
   automated match to d1oy5a_

Details for d6nvra1

PDB Entry: 6nvr, 1.56 Å

PDB Description: crystal structure of trmd, a trna-(n1g37) methyltransferase, from mycobacterium abscessus in apo form

PDB Compounds: (A:) tRNA (guanine-N(1)-)-methyltransferase

SCOPe Domain Sequences for d6nvra1:

Sequence, based on SEQRES records:

>d6nvra1 c.116.1.0 (A:1-227) automated matches {Mycobacteroides abscessus [TaxId: 36809]}
mkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmv
mkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrvad
daatrmrvrevsigdyvlnggeaaalviieavlrlvpgvlgnalsaqedshsegmaslle
gpsytrppswrgmdvppvllsgdhakiaawraeqsrqrtierrpdll

Sequence, based on observed residues (ATOM records):

>d6nvra1 c.116.1.0 (A:1-227) automated matches {Mycobacteroides abscessus [TaxId: 36809]}
mkidvvtifpeylqpvrqslpgkaidaglvdvavhdlrrwthdvhksvddspygggpgmv
mkptvwgdaldeictsetllvvptpagypftqetawqwstedhlviacgryegidqrvad
daatrmrvrevsigdyvlnggeaaalviieavlrlvpgvlgnasllegpsytrppswrgm
dvppvllsgdhakiaawraeqsrqrtierrpdll

Timeline for d6nvra1:

• d6nvra1 is new in SCOPe 2.07-stable
  
• d6nvra1 appears in the current release, SCOPe 2.08