SCOPe 2.07: Domain d6pabd1: 6pab D:1-326

Lineage for d6pabd1 (6pab D:1-326)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.88: Glutaminase/Asparaginase [53773] (1 superfamily)
   consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
   Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
   Domain 2 has parallel beta-sheet of 4 strands, order 1234

4. Superfamily c.88.1: Glutaminase/Asparaginase [53774] (2 families)

5. Family c.88.1.1: Glutaminase/Asparaginase [53775] (4 proteins)
   automatically mapped to Pfam PF00710

6. Protein Asparaginase type II [53776] (5 species)

7. Species Escherichia coli [TaxId:562] [53777] (40 PDB entries)

8. Domain d6pabd1: 6pab D:1-326 [373670]
   Other proteins in same PDB: d6paba2, d6pabb2, d6pabc2, d6pabd2
   automated match to d1nnsa_
   complexed with asp, cit, imd

Details for d6pabd1

PDB Entry: 6pab, 1.73 Å

PDB Description: e. coli l-asparaginase ii in complex with l-asp at ph 7.0

PDB Compounds: (D:) L-asparaginase 2

SCOPe Domain Sequences for d6pabd1:

Sequence, based on SEQRES records:

>d6pabd1 c.88.1.1 (D:1-326) Asparaginase type II {Escherichia coli [TaxId: 562]}
lpnitilatggtiagggdsatksnytvgkvgvenlvnavpqlkdianvkgeqvvnigsqd
mndnvwltlakkintdcdktdgfvithgtdtmeetayfldltvkcdkpvvmvgamrpsts
msadgpfnlynavvtaadkasanrgvlvvmndtvldgrdvtktnttdvatfksvnygplg
yihngkidyqrtparkhtsdtpfdvsklnelpkvgivynyanasdlpakalvdagydgiv
sagvgngnlyksvfdtlataaktgtavvrssrvptgattqdaevddakygfvasgtlnpq
karvllqlaltqtkdpqqiqqifnqy

Sequence, based on observed residues (ATOM records):

>d6pabd1 c.88.1.1 (D:1-326) Asparaginase type II {Escherichia coli [TaxId: 562]}
lpnitilatggtiavgvenlvnavpqlkdianvkgeqvvnigsqdmndnvwltlakkint
dcdktdgfvithgtdtmeetayfldltvkcdkpvvmvgamrpstsmsadgpfnlynavvt
aadkasanrgvlvvmndtvldgrdvtktnttdvatfksvnygplgyihngkidyqrtpar
khtsdtpfdvsklnelpkvgivynyanasdlpakalvdagydgivsagvgngnlyksvfd
tlataaktgtavvrssrvptgattqdaevddakygfvasgtlnpqkarvllqlaltqtkd
pqqiqqifnqy

Timeline for d6pabd1:

• d6pabd1 is new in SCOPe 2.07-stable
  
• d6pabd1 appears in the current release, SCOPe 2.08