SCOPe 2.07: Domain d5vrja1: 5vrj A:1-195

Lineage for d5vrja1 (5vrj A:1-195)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (37 families)

5. Family c.52.1.34: PA N-terminal domain [254166] (2 proteins)
   Pfam PF00603; relationship to endonucleases discussed in PubMed 19194458

6. Protein PA N-terminal domain [254375] (7 species)

7. Species Influenza A virus [TaxId:93838] [254808] (91 PDB entries)

8. Domain d5vrja1: 5vrj A:1-195 [350934]
   Other proteins in same PDB: d5vrja2
   automated match to d4e5ed_
   complexed with mg, r07, so4

Details for d5vrja1

PDB Entry: 5vrj, 2.3 Å

PDB Description: 2009 h1n1 pa endonuclease in complex with ro-7 and magnesium

PDB Compounds: (A:) Polymerase acidic protein

SCOPe Domain Sequences for d5vrja1:

Sequence; same for both SEQRES and ATOM records:

>d5vrja1 c.52.1.34 (A:1-195) PA N-terminal domain {Influenza A virus [TaxId: 93838]}
medfvrqcfnpmivelaekamkeygedpkietnkfaaicthlevcfmysdggskhrfeii
egrdrimawtvvnsicnttgvekpkflpdlydykenrfieigvtrrevhiyylekankik
sekthihifsftgeematkadytldeesrariktrlftirqemasrslwdsfrqse

Timeline for d5vrja1:

• d5vrja1 is new in SCOPe 2.07-stable
  
• d5vrja1 appears in the current release, SCOPe 2.08