SCOPe 2.08: Domain d3jb9r_: 3jb9 R:

Lineage for d3jb9r_ (3jb9 R:)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.8: TPR-like [48452] (11 families)

5. Family a.118.8.7: HAT/Suf repeat [158782] (4 proteins)
   includes Pfam PF05843
   Pfam PF02184
   this is a repeat family; one repeat unit is 2ond A:372-408 found in domain

6. Protein Pre-mRNA splicing factor Cwf4 / Syf3 [346030] (1 species)
7. Species Schizosaccharomyces pombe 972h- [TaxId:284812] [346192] (1 PDB entry)

8. Domain d3jb9r_: 3jb9 R: [344812]
   Other proteins in same PDB: d3jb9a1, d3jb9a2, d3jb9a3, d3jb9a4, d3jb9a5, d3jb9b1, d3jb9b2, d3jb9b3, d3jb9b4, d3jb9b5, d3jb9c_, d3jb9e_, d3jb9f_, d3jb9g_, d3jb9h_, d3jb9i_, d3jb9j_, d3jb9k_, d3jb9l_, d3jb9m_, d3jb9s1, d3jb9s2, d3jb9t1, d3jb9t2, d3jb9u1, d3jb9u2, d3jb9u3, d3jb9v1, d3jb9v2, d3jb9w_, d3jb9x1, d3jb9x2, d3jb9x3, d3jb9x4, d3jb9y1, d3jb9y2, d3jb9z_
   protein/RNA complex; complexed with adp, gdp, mg, zn
   applies to all domains of a family if the common domain is composed of a different number of small repeating units

Details for d3jb9r_

PDB Entry: 3jb9, 3.6 Å

PDB Description: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution

PDB Compounds: (R:) Pre-mRNA-splicing factor cwf4

SCOPe Domain Sequences for d3jb9r_:

Sequence, based on SEQRES records:

>d3jb9r_ a.118.8.7 (R:) Pre-mRNA splicing factor Cwf4 / Syf3 {Schizosaccharomyces pombe 972h- [TaxId: 284812]}
xxxxxxxxxxxxxxxxxxxxxxxxxxxxnitdleelqefqgrkrkefedairrnrlamgh
wmrygqweldqkefararsvferaldvdstyiplwlkyiecemknrninharnlfdravt
qlprvdklwykyvymeemlgnitgcrqvferwlkwepdencwmsyirmerryhenerarg
iyerfvvvhpevtnwlrwarfeeecgnaanvrqvylaaidalgqeflnerffiafakfei
rqkeyerartifkyaidfmprsksmelykeythfekqfxxxxxxxxxxxxxxxxxxxxxx
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Sequence, based on observed residues (ATOM records):

>d3jb9r_ a.118.8.7 (R:) Pre-mRNA splicing factor Cwf4 / Syf3 {Schizosaccharomyces pombe 972h- [TaxId: 284812]}
xxxxxxxxxxxxxxxxnitdleelqefqgrkrkefedairrnrlamghwmrygqweldqk
efararsvferaldvdstyiplwlkyiecemknrninharnlfdravtqlprvdklwyky
vymeemlgnitgcrqvferwlkwepdencwmsyirmerryhenerargiyerfvvvhpev
tnwlrwarfeeecgnaanvrqvylaaidalgqeflnerffiafakfeirqkeyerartif
kyaidfmprsksmelykeythfekqfxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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Timeline for d3jb9r_:

• d3jb9r_ first appeared in SCOPe 2.07