Lineage for d5xhgd1 (5xhg D:1-120)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2344608Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2344609Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2344610Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2344816Protein Immunoglobulin heavy chain variable domain, VH [88543] (22 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2344923Species Escherichia coli [TaxId:316407] [343346] (1 PDB entry)
  8. 2344925Domain d5xhgd1: 5xhg D:1-120 [343347]
    Other proteins in same PDB: d5xhga1, d5xhga2, d5xhgb2, d5xhgc1, d5xhgc2, d5xhgd2
    automated match to d1n8zb1
    complexed with edo, oaz, peg, so4

Details for d5xhgd1

PDB Entry: 5xhg (more details), 1.76 Å

PDB Description: crystal structure of trastuzumab fab fragment bearing ne-(o- azidobenzyloxycarbonyl)-l-lysine
PDB Compounds: (D:) polypeptide(H)

SCOPe Domain Sequences for d5xhgd1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5xhgd1 b.1.1.1 (D:1-120) Immunoglobulin heavy chain variable domain, VH {Escherichia coli [TaxId: 316407]}
evqlvesggglvqpggslrlscaasgfnikdtyihwvrqapgkglewvariyptngytry
adsvkgrftisadtskntaylqmnslraedtavyycsrwggdgfyamdywgqgtlvtvss

SCOPe Domain Coordinates for d5xhgd1:

Click to download the PDB-style file with coordinates for d5xhgd1.
(The format of our PDB-style files is described here.)

Timeline for d5xhgd1: