Lineage for d1b9da_ (1b9d A:)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2493668Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2493948Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
  6. 2493949Protein Retroviral integrase, catalytic domain [53108] (4 species)
  7. 2493955Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (73 PDB entries)
  8. 2493966Domain d1b9da_: 1b9d A: [33649]
    complexed with cac, so4

Details for d1b9da_

PDB Entry: 1b9d (more details), 1.7 Å

PDB Description: mobility of an hiv-1 integrase active site loop is correlated with catalytic activity
PDB Compounds: (A:) protein (integrase)

SCOPe Domain Sequences for d1b9da_:

Sequence, based on SEQRES records: (download)

>d1b9da_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacwwagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlktav
qmavfihnkkrkggiggysagerivdiiatdiqt

Sequence, based on observed residues (ATOM records): (download)

>d1b9da_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
spgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvhtd
ngsnftsttvkaacwwagikqefggviesmnkelkkiigqvrdqaehlktavqmavfihn
kkrkggysagerivdiiatdiqt

SCOPe Domain Coordinates for d1b9da_:

Click to download the PDB-style file with coordinates for d1b9da_.
(The format of our PDB-style files is described here.)

Timeline for d1b9da_: