SCOPe 2.07: Domain d5vmba1: 5vmb A:1-417

Lineage for d5vmba1 (5vmb A:1-417)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.4: GABA-aminotransferase-like [53417] (17 proteins)
   formerly omega-Aminoacid:pyruvate aminotransferase-like

6. Protein automated matches [190152] (25 species)
   not a true protein

7. Species Acinetobacter baumannii [TaxId:470] [334358] (1 PDB entry)

8. Domain d5vmba1: 5vmb A:1-417 [334359]
   Other proteins in same PDB: d5vmba2
   automated match to d4n0wb_

Details for d5vmba1

PDB Entry: 5vmb, 2.5 Å

PDB Description: crystal structure of a glycine hydroxymethyltransferase from acinetobacter baumannii

PDB Compounds: (A:) serine hydroxymethyltransferase

SCOPe Domain Sequences for d5vmba1:

Sequence, based on SEQRES records:

>d5vmba1 c.67.1.4 (A:1-417) automated matches {Acinetobacter baumannii [TaxId: 470]}
mfanisisefdpelaqaiasederqeahieliasenycspavmeaqgskltnkyaegypg
kryyggcefvdvieqmaidrakelfgadyanvqphagsqansavylallnpgdtvlgmsl
ahgghlthgakvsfsgktynavqyglnaetgeidyeeverlalehkprmivagfsaysrv
vdwqrfrdiadkvgaylfvdmahvaglvaagvypnpvqiadvttttthktlrgprsglil
akaneeiekklqsavfpgnqggplmhaiaakaicfkeamsddfkayqqqvvknaqamaev
fiargydvvsggtdnhlfllslikqdvtgkdadawlgaahitvnknsvpndprspfvtsg
irigtpavttrgfgeaevrelagwiadvidskgdekviadvkakveavcakfpvyak

Sequence, based on observed residues (ATOM records):

>d5vmba1 c.67.1.4 (A:1-417) automated matches {Acinetobacter baumannii [TaxId: 470]}
mfanisisefdpelaqaiasederqeahieliasenycspavmeaqgskltnkyaegypg
kryyggcefvdvieqmaidrakelfgadyanvqphagsqansavylallnpgdtvlgmsy
navqyglnaetgeidyeeverlalehkprmivagfsaysrvvdwqrfrdiadkvgaylfv
dmahvaglvaagvypnpvqiadvttttthktlrgprsglilakaneeiekklqsavfpgn
qggplmhaiaakaicfkeamsddfkayqqqvvknaqamaevfiargydvvsggtdnhlfl
lslikqdvtgkdadawlgaahitvnknsvpndprspfvtsgirigtpavttrgfgeaevr
elagwiadvidskgdekviadvkakveavcakfpvyak

Timeline for d5vmba1:

• d5vmba1 first appeared in SCOPe 2.06
  
• d5vmba1 appears in the current release, SCOPe 2.08