SCOPe 2.07: Domain d5m8df2: 5m8d F:77-378

Lineage for d5m8df2 (5m8d F:77-378)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)

5. Family d.142.1.10: Tubulin tyrosine ligase (TTL) C-terminal domain-like [310626] (2 proteins)
   Pfam PF03133; PubMed 22020298

6. Protein Tubulin tyrosine ligase (TTL) C-terminal domain [310728] (3 species)

7. Species Chicken (Gallus gallus) [TaxId:9031] [311385] (158 PDB entries)

8. Domain d5m8df2: 5m8d F:77-378 [331697]
   Other proteins in same PDB: d5m8da1, d5m8da2, d5m8db1, d5m8db2, d5m8dc1, d5m8dc2, d5m8dd1, d5m8dd2, d5m8de_, d5m8df1, d5m8df3
   automated match to d3tiia2
   complexed with acp, ca, gdp, gol, gtp, mes, mg, ugi

Details for d5m8df2

PDB Entry: 5m8d, 2.25 Å

PDB Description: tubulin mtd265-r1 complex

PDB Compounds: (F:) Tubulin-tyrosine ligase

SCOPe Domain Sequences for d5m8df2:

Sequence, based on SEQRES records:

>d5m8df2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsesctwfpesyviyptnlktpvapaqngirhlinntrtderevflaayn
rrregregnvwiakssagakgegilisseaselldfideqgqvhviqkylekplllepgh
rkfdirswvlvdhlyniylyregvlrtssepynsanfqdktchltnhciqkeysknygry
eegnemffeefnqylmdalnttlensillqikhiirsclmciepaistkhlhyqsfqlfg
fdfmvdeelkvwlievngapacaqklyaelcqgivdvaissvfpladtgqktsqptsifi
kl

Sequence, based on observed residues (ATOM records):

>d5m8df2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
lvkliktspelsesctwfpesyviyptderevflaaynrrregregnvwiakssagakge
gilisseaselldfideqgqvhviqkylekplllepghrkfdirswvlvdhlyniylyre
gvlrtssepynsanfqdktchltnhciqkygryeegnemffeefnqylmdalnttlensi
llqikhiirsclmciepaistkhlhyqsfqlfgfdfmvdeelkvwlievngapacaqkly
aelcqgivdvaissvfplasifikl

Timeline for d5m8df2:

• d5m8df2 first appeared in SCOPe 2.06
  
• d5m8df2 appears in the current release, SCOPe 2.08