SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for d5b5ee_ (5b5e e:)

  1. Root: SCOPe 2.06
  2. 2223823Class f: Membrane and cell surface proteins and peptides [56835] (59 folds)
  3. 2226297Fold f.23: Single transmembrane helix [81407] (42 superfamilies)
    not a true fold
  4. 2227446Superfamily f.23.38: Cytochrome b559 subunits [161045] (1 family) (S)
  5. 2227447Family f.23.38.1: Cytochrome b559 subunits [161046] (3 protein domains)
    Pfam PF00283 comprises PsbF beta subunit (PsbF) and the transmembrane helix of alpha subunit (PsbE) that bind one heme group between them; the lumenal region of the alpha subunit is covered by Pfam PF00284
  6. 2227448Protein Cytochrome b559 subunit alpha, PsbE [161047] (2 species)
  7. 2227452Species Thermosynechococcus vulcanus [TaxId:32053] [189913] (8 PDB entries)
  8. 2287009Domain d5b5ee_: 5b5e e: [330310]
    Other proteins in same PDB: d5b5eb_, d5b5ec_, d5b5ed_, d5b5et_
    automated match to d2axte1
    complexed with bcr, bct, ca, cl, cla, dgd, dms, fe2, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, rrx, sqd, unl

Details for d5b5ee_

PDB Entry: 5b5e (more details), 1.87 Å

PDB Description: crystal structure analysis of photosystem ii complex
PDB Compounds: (e:) Cytochrome b559 subunit alpha

SCOPe Domain Sequences for d5b5ee_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5b5ee_ f.23.38.1 (e:) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus vulcanus [TaxId: 32053]}
gerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsipl
vtdrfeakqqvetfleqlk

SCOPe Domain Coordinates for d5b5ee_:

Click to download the PDB-style file with coordinates for d5b5ee_.
(The format of our PDB-style files is described here.)

Timeline for d5b5ee_:

  • d5b5ee_ appears in periodic updates to SCOPe 2.06 starting on 2017-02-24