Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds) |
Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily) complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk") |
Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families) |
Family e.76.1.2: Spike glycoprotein-like [161012] (1 protein) Pfam PF00974; Rhabdovirus spike glycoprotein |
Protein Spike glycoprotein [161013] (2 species) |
Species Vesicular stomatitis indiana virus [TaxId:11277] [161014] (2 PDB entries) Uniprot P04883 17-425 representative prefusion form 2CMZ; representative acidic conformation 2J6J |
Domain d5i2sa_: 5i2s A: [314965] automated match to d2j6ja_ complexed with nag, yb |
PDB Entry: 5i2s (more details), 3 Å
SCOPe Domain Sequences for d5i2sa_:
Sequence; same for both SEQRES and ATOM records: (download)
>d5i2sa_ e.76.1.2 (A:) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]} kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphiqda
Timeline for d5i2sa_: