SCOPe 2.04: Domain d1bvnp2: 1bvn P:1-403

Lineage for d1bvnp2 (1bvn P:1-403)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein Animal alpha-amylase [51458] (3 species)
   contains Ca2+-binding subdomain, residues 100-170

7. Species Pig (Sus scrofa) [TaxId:9823] [51459] (13 PDB entries)

8. Domain d1bvnp2: 1bvn P:1-403 [28754]
   Other proteins in same PDB: d1bvnp1, d1bvnt_
   complexed with ca, cl

Details for d1bvnp2

PDB Entry: 1bvn, 2.5 Å

PDB Description: pig pancreatic alpha-amylase in complex with the proteinaceous inhibitor tendamistat

PDB Compounds: (P:) protein (alpha-amylase)

SCOPe Domain Sequences for d1bvnp2:

Sequence; same for both SEQRES and ATOM records:

>d1bvnp2 c.1.8.1 (P:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}
qyapqtqsgrtdivhlfewrwvdialecerylgpkgfggvqvsppnenvvvtnpsrpwwe
ryqpvsyklctrsgnenefrdmvtrcnnvgvriyvdavinhmcgsgaaagtgttcgsycn
pgsrefpavpysawdfndgkcktasggiesyndpyqvrdcqlvglldlalekdyvrsmia
dylnklidigvagfrldaskhmwpgdikavldklhnlntnwfpagsrpfifqevidlgge
aissseyfgngrvtefkygaklgtvvrkwsgekmsylknwgegwgfmpsdralvfvdnhd
nqrghgaggssiltfwdarlykvavgfmlahpygftrvmssyrwarnfvngedvndwigp
pnnngvikevtinadttcgndwvcehrwreirnmvwfrnvvdg

Timeline for d1bvnp2:

• d1bvnp2 first appeared (with stable ids) in SCOP 1.55
  
• d1bvnp2 appears in SCOPe 2.03
  
• d1bvnp2 appears in SCOPe 2.05
  
• d1bvnp2 appears in the current release, SCOPe 2.08