SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2072005Fold b.84: Barrel-sandwich hybrid [51229] (5 superfamilies)
    sandwich of half-barrel shaped beta-sheets
  4. 2072108Superfamily b.84.2: Rudiment single hybrid motif [51246] (3 families) (S)
  5. 2072233Family b.84.2.0: automated matches [254217] (1 protein)
    not a true family
  6. 2072234Protein automated matches [254496] (12 species)
    not a true protein

Species:

  1. 2072235Aquifex aeolicus [TaxId:63363] [255714] (2 PDB entries)
    1. Domains for 2yw2:
      1. 2072236Domain d2yw2a3: 2yw2 A:323-423 [244838]
        Other proteins in same PDB: d2yw2a1, d2yw2a2, d2yw2b1, d2yw2b2
        automated match to d1gsoa1
        complexed with atp, po4
      2. 2072237Domain d2yw2b3: 2yw2 B:323-423 [244841]
        Other proteins in same PDB: d2yw2a1, d2yw2a2, d2yw2b1, d2yw2b2
        automated match to d1gsoa1
        complexed with atp, po4
    2. Domains for 2yya:
      1. 2072238Domain d2yyaa3: 2yya A:323-423 [244884]
        Other proteins in same PDB: d2yyaa1, d2yyaa2, d2yyab1, d2yyab2
        automated match to d1gsoa1
      2. 2072239Domain d2yyab3: 2yya B:323-423 [244887]
        Other proteins in same PDB: d2yyaa1, d2yyaa2, d2yyab1, d2yyab2
        automated match to d1gsoa1
  2. 2072240Campylobacter jejuni [TaxId:192222] [256008] (2 PDB entries)
    1. Domains for 3ouu:
      1. 2072243Domain d3ouua3: 3ouu A:330-443 [248342]
        Other proteins in same PDB: d3ouua1, d3ouua2, d3ouua4, d3ouub1, d3ouub2
        automated match to d1ulza1
        complexed with anp, ca, cac, fmt, gol
      2. 2072244Domain d3ouub3: 3ouu B:330-443 [248345]
        Other proteins in same PDB: d3ouua1, d3ouua2, d3ouua4, d3ouub1, d3ouub2
        automated match to d1ulza1
        complexed with anp, ca, cac, fmt, gol
    2. Domains for 3ouz:
      1. 2072241Domain d3ouza3: 3ouz A:330-443 [248348]
        Other proteins in same PDB: d3ouza1, d3ouza2, d3ouza4, d3ouzb1, d3ouzb2
        automated match to d1ulza1
        complexed with adp, fmt, gol, mg, mlt, srt, tla
      2. 2072242Domain d3ouzb3: 3ouz B:330-443 [248351]
        Other proteins in same PDB: d3ouza1, d3ouza2, d3ouza4, d3ouzb1, d3ouzb2
        automated match to d1ulza1
        complexed with adp, fmt, gol, mg, mlt, srt, tla
  3. 2072245Ehrlichia chaffeensis [TaxId:205920] [255936] (1 PDB entry)
  4. 2072247Escherichia coli K-12 [TaxId:83333] [255843] (2 PDB entries)
    1. Domains for 3g8c:
      1. 2072250Domain d3g8ca3: 3g8c A:331-444 [246262]
        Other proteins in same PDB: d3g8ca1, d3g8ca2, d3g8cb1, d3g8cb2
        automated match to d2w70a3
        complexed with adp, bct, btn, mg
      2. 2072251Domain d3g8cb3: 3g8c B:331-444 [246265]
        Other proteins in same PDB: d3g8ca1, d3g8ca2, d3g8cb1, d3g8cb2
        automated match to d2w70a3
        complexed with adp, bct, btn, mg
    2. Domains for 3g8d:
      1. 2072248Domain d3g8da2: 3g8d A:331-444 [246267]
        Other proteins in same PDB: d3g8da1, d3g8db1, d3g8db2
        automated match to d2w70a3
        complexed with adp, mg, so4; mutant
      2. 2072249Domain d3g8db3: 3g8d B:331-444 [246270]
        Other proteins in same PDB: d3g8da1, d3g8db1, d3g8db2
        automated match to d2w70a3
        complexed with adp, mg, so4; mutant
  5. 2072252Geobacillus kaustophilus [TaxId:1462] [255711] (4 PDB entries)
    1. Domain for 2yrw:
    2. Domain for 2yrx:
    3. Domain for 2ys6:
    4. Domain for 2ys7:
  6. 2072257Geobacillus thermodenitrificans [TaxId:33940] [255127] (1 PDB entry)
  7. 2072260Haemophilus influenzae [TaxId:71421] [268355] (8 PDB entries)
    1. Domain for 4mv1:
    2. Domain for 4mv3:
    3. Domain for 4mv4:
    4. Domain for 4mv6:
    5. Domain for 4mv7:
    6. Domain for 4mv8:
    7. Domain for 4mv9:
    8. Domain for 4rzq:
  8. 2072269Human (Homo sapiens) [TaxId:9606] [255567] (1 PDB entry)
  9. 2072272Pseudomonas aeruginosa [TaxId:287] [255074] (2 PDB entries)
    1. Domains for 2c00:
      1. 2072274Domain d2c00a3: 2c00 A:331-445 [241399]
        Other proteins in same PDB: d2c00a1, d2c00a2, d2c00b1, d2c00b2
        automated match to d2w70a3
        complexed with so4
      2. 2072275Domain d2c00b3: 2c00 B:331-445 [241402]
        Other proteins in same PDB: d2c00a1, d2c00a2, d2c00b1, d2c00b2
        automated match to d2w70a3
        complexed with so4
    2. Domain for 2vqd:
  10. 2072276Staphylococcus aureus [TaxId:1280] [255619] (1 PDB entry)
  11. 2072279Yersinia pestis [TaxId:214092] [255971] (1 PDB entry)
  12. 2287449Mycobacterium tuberculosis [TaxId:83332] [330750] (1 PDB entry)

More info for Protein automated matches from b.84.2.0: automated matches

Timeline for Protein automated matches from b.84.2.0: automated matches: