SCOPe 2.04: Domain d2i5ja1: 2i5j A:1-429

Lineage for d2i5ja1 (2i5j A:1-429)

1. Root: SCOPe 2.04

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.2: Reverse transcriptase [56686] (3 proteins)

6. Protein HIV-1 reverse transcriptase [56689] (3 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [56690] (145 PDB entries)
   Uniprot P04585 159-692 # chain A coverage; chain B is shorter: 162-582 ! Uniprot P03366 186-725 # chain A coverage; chain B coverage: 156-584 ! Uniprot P04585 158-698 # chain A coverage; chain B is shorter: 159-595

8. Domain d2i5ja1: 2i5j A:1-429 [238681]
   Other proteins in same PDB: d2i5ja2
   automated match to d2ykna1
   protein/RNA complex; complexed with glc, k05, mg, suc

Details for d2i5ja1

PDB Entry: 2i5j, 3.15 Å

PDB Description: crystal structure of hiv-1 reverse transcriptase (rt) in complex with dhbnh, an rnase h inhibitor

PDB Compounds: (A:) Reverse transcriptase/ribonuclease H P66 subunit

SCOPe Domain Sequences for d2i5ja1:

Sequence; same for both SEQRES and ATOM records:

>d2i5ja1 e.8.1.2 (A:1-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
pispietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpv
faikkkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvpl
dedfrkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdivi
yqymddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwt
vqpivlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeae
lelaenreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrga
htndvkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntp
plvklwyql

Timeline for d2i5ja1:

• d2i5ja1 is new in SCOPe 2.04-stable
  
• d2i5ja1 appears in SCOPe 2.05
  
• d2i5ja1 appears in the current release, SCOPe 2.08