SCOPe 2.08: Domain d4f13b1: 4f13 B:6-356

Lineage for d4f13b1 (4f13 B:6-356)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
   multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

4. Superfamily a.102.3: Chondroitin AC/alginate lyase [48230] (2 families)
   incomplete toroid

5. Family a.102.3.1: Alginate lyase A1-III [48231] (1 protein)

6. Protein Alginate lyase A1-III [48232] (1 species)

7. Species Sphingomonas sp., A1 [TaxId:28214] [48233] (8 PDB entries)

8. Domain d4f13b1: 4f13 B:6-356 [192412]
   Other proteins in same PDB: d4f13a2, d4f13b2

Details for d4f13b1

PDB Entry: 4f13, 2.21 Å

PDB Description: alginate lyase a1-iii y246f complexed with tetrasaccharide

PDB Compounds: (B:) Alginate lyase

SCOPe Domain Sequences for d4f13b1:

Sequence, based on SEQRES records:

>d4f13b1 a.102.3.1 (B:6-356) Alginate lyase A1-III {Sphingomonas sp., A1 [TaxId: 28214]}
hpfdqavvkdptasyvdvkarrtflqsgqlddrlkaalpkeydctteatpnpqqgemvip
rrylsgnhgpvnpdyepvvtlyrdfekisatlgnlyvatgkpvyatcllnmldkwakada
llnydpksqswyqvewsaataafalstmmaepnvdtaqrervvkwlnrvarhqtsfpggd
tsccnnhsywrgqeatiigviskddelfrwglgryvqamglinedgsfvhemtrheqslh
fqnyamlpltmiaetasrqgidlyaykengrdihsarkfvfaavknpdlikkyasepqdt
rafkpgrgdlnwieyqrarfgfadelgfmtvpifdprtggsatllaykpqg

Sequence, based on observed residues (ATOM records):

>d4f13b1 a.102.3.1 (B:6-356) Alginate lyase A1-III {Sphingomonas sp., A1 [TaxId: 28214]}
hpfdqavvkdptasyvdvkarrtflqsgqlddrlkaalpkeydctteatpnpqqgemvip
rryvnpdyepvvtlyrdfekisatlgnlyvatgkpvyatcllnmldkwakadallnydpk
sqswyqvewsaataafalstmmaepnvdtaqrervvkwlnrvarhqtsfpggdtsccnnh
sywrgqeatiigviskddelfrwglgryvqamglinedgsfvhemtrheqslhfqnyaml
pltmiaetasrqgidlyaykengrdihsarkfvfaavknpdlikkyasepqdtrafkpgr
gdlnwieyqrarfgfadelgfmtvpifdprtggsatllaykpqg

Timeline for d4f13b1:

• d4f13b1 first appeared in SCOPe 2.02, called d4f13b_
  
• d4f13b1 appears in SCOPe 2.07