SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070786Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2071232Family b.82.2.0: automated matches [191672] (1 protein)
    not a true family
  6. 2071233Protein automated matches [191281] (13 species)
    not a true protein

Species:

  1. 2071234Caulobacter crescentus [TaxId:190650] [311323] (1 PDB entry)
  2. 2071237Fungus (Neurospora crassa) [TaxId:5141] [278316] (4 PDB entries)
    1. Domains for 5c3p:
      1. 2071242Domain d5c3pa_: 5c3p A: [278317]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      2. 2071243Domain d5c3pb1: 5c3p B:1-331 [278320]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      3. 2071244Domain d5c3pc_: 5c3p C: [278319]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      4. 2071245Domain d5c3pd_: 5c3p D: [278321]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
    2. Domains for 5c3q:
      1. 2071238Domain d5c3qa1: 5c3q A:1-333 [278329]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      2. 2071239Domain d5c3qb_: 5c3q B: [278330]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      3. 2071240Domain d5c3qc_: 5c3q C: [278331]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      4. 2071241Domain d5c3qd_: 5c3q D: [278336]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
    3. Domains for 5c3r:
      1. 2071250Domain d5c3ra_: 5c3r A: [278327]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      2. 2071251Domain d5c3rb_: 5c3r B: [278326]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      3. 2071252Domain d5c3rc_: 5c3r C: [278325]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      4. 2071253Domain d5c3rd_: 5c3r D: [278328]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
    4. Domains for 5c3s:
      1. 2071246Domain d5c3sa1: 5c3s A:1-332 [278318]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      2. 2071247Domain d5c3sb_: 5c3s B: [278322]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      3. 2071248Domain d5c3sc_: 5c3s C: [278324]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      4. 2071249Domain d5c3sd_: 5c3s D: [278323]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
  3. 2071254Human (Homo sapiens) [TaxId:9606] [255708] (2 PDB entries)
    1. Domains for 2ypd:
      1. 2071255Domain d2ypda1: 2ypd A:2157-2497 [244795]
        Other proteins in same PDB: d2ypda2, d2ypdb2
        automated match to d4c8da_
        complexed with emt, na
      2. 2071256Domain d2ypdb1: 2ypd B:2157-2497 [244796]
        Other proteins in same PDB: d2ypda2, d2ypdb2
        automated match to d4c8da_
        complexed with emt, na
    2. Domains for 5fzo:
      1. 2271284Domain d5fzob1: 5fzo B:2157-2498 [314589]
        Other proteins in same PDB: d5fzoa2, d5fzob2
        automated match to d4c8da_
        complexed with cl, edo, mn
      2. 2271285Domain d5fzoa1: 5fzo A:2157-2498 [314590]
        Other proteins in same PDB: d5fzoa2, d5fzob2
        automated match to d4c8da_
        complexed with cl, edo, mn
  4. 2071257Mycobacterium abscessus [TaxId:561007] [311480] (1 PDB entry)
  5. 2071266Mycobacterium avium [TaxId:243243] [189899] (1 PDB entry)
  6. 2071269Mycobacterium marinum [TaxId:216594] [196268] (1 PDB entry)
  7. 2071272Mycobacterium smegmatis [TaxId:246196] [193240] (1 PDB entry)
  8. 2071281Mycobacterium tuberculosis [TaxId:1773] [197235] (2 PDB entries)
    1. Domains for 4cvy:
      1. 2071282Domain d4cvya_: 4cvy A: [262636]
        automated match to d3swtb_
        complexed with fe, no3
      2. 2071283Domain d4cvyb_: 4cvy B: [262637]
        automated match to d3swtb_
        complexed with fe, no3
      3. 2071284Domain d4cvyc_: 4cvy C: [261654]
        automated match to d3swtb_
        complexed with fe, no3
      4. 2071285Domain d4cvyd_: 4cvy D: [261655]
        automated match to d3swtb_
        complexed with fe, no3
    2. Domains for 4ffa:
      1. 2071286Domain d4ffaa_: 4ffa A: [197236]
        automated match to d3r1ja_
        complexed with no3
      2. 2071287Domain d4ffab_: 4ffa B: [197237]
        automated match to d3r1ja_
        complexed with no3
      3. 2071288Domain d4ffac_: 4ffa C: [202031]
        automated match to d4ffaa_
        complexed with no3
      4. 2071289Domain d4ffad_: 4ffa D: [202032]
        automated match to d4ffaa_
        complexed with no3
  9. 2071290Pseudomonas putida [TaxId:160488] [259652] (2 PDB entries)
    1. Domains for 4iw3:
      1. 2071299Domain d4iw3a_: 4iw3 A: [259653]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
        automated match to d4jzra_
        complexed with gdp, mg, mn, oga
      2. 2071300Domain d4iw3j_: 4iw3 J: [259654]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
        automated match to d4jzra_
        complexed with gdp, mg, mn, oga
    2. Domains for 4j25:
      1. 2071291Domain d4j25a1: 4j25 A:2-206 [259759]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4jzra_
        complexed with mn, oga
      2. 2071292Domain d4j25b1: 4j25 B:2-203 [262736]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      3. 2071293Domain d4j25c1: 4j25 C:2-202 [262737]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      4. 2071294Domain d4j25d1: 4j25 D:2-207 [262738]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      5. 2071295Domain d4j25e_: 4j25 E: [262739]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      6. 2071296Domain d4j25f_: 4j25 F: [262740]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      7. 2071297Domain d4j25g_: 4j25 G: [262741]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      8. 2071298Domain d4j25h_: 4j25 H: [262742]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
  10. 2071301Rhizobium loti [TaxId:266835] [259686] (2 PDB entries)
    1. Domain for 4p7w:
    2. Domain for 4p7x:
  11. 2071304Yersinia pestis [TaxId:632] [268729] (1 PDB entry)
  12. 2271594Burkholderia xenovorans [TaxId:266265] [314895] (3 PDB entries)
    1. Domains for 5hsx:
      1. 2271595Domain d5hsxb_: 5hsx B: [314896]
        automated match to d3r1ja_
        complexed with edo, gol, na
      2. 2271699Domain d5hsxa_: 5hsx A: [315000]
        automated match to d1oiic_
        complexed with edo, gol, na
    2. Domains for 5j92:
      1. 2273961Domain d5j92d_: 5j92 D: [317262]
        automated match to d1otjc_
        complexed with act, fe2
      2. 2273988Domain d5j92b_: 5j92 B: [317289]
        automated match to d1otjc_
        complexed with act, fe2
      3. 2273991Domain d5j92c_: 5j92 C: [317292]
        automated match to d1otjc_
        complexed with act, fe2
      4. 2274043Domain d5j92a_: 5j92 A: [317344]
        automated match to d1otjc_
        complexed with act, fe2
    3. Domains for 5keu:
      1. 2275511Domain d5keub_: 5keu B: [318812]
        automated match to d5hsxb_
        complexed with edo, fmt, mg
      2. 2275520Domain d5keua_: 5keu A: [318821]
        automated match to d5hsxb_
        complexed with edo, fmt, mg
  13. 2291927Burkholderia ambifaria [TaxId:398577] [335228] (1 PDB entry)

More info for Protein automated matches from b.82.2.0: automated matches

Timeline for Protein automated matches from b.82.2.0: automated matches: