Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2070014Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2070786Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2071232Family b.82.2.0: automated matches [191672] (1 protein)
    not a true family
  6. 2071233Protein automated matches [191281] (13 species)
    not a true protein

Species:

  1. 2071234Caulobacter crescentus [TaxId:190650] [311323] (1 PDB entry)
  2. 2071237Fungus (Neurospora crassa) [TaxId:5141] [278316] (4 PDB entries)
    1. Domains for 5c3p:
      1. 2071242Domain d5c3pa_: 5c3p A: [278317]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      2. 2071243Domain d5c3pb1: 5c3p B:1-331 [278320]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      3. 2071244Domain d5c3pc_: 5c3p C: [278319]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
      4. 2071245Domain d5c3pd_: 5c3p D: [278321]
        Other proteins in same PDB: d5c3pb2
        automated match to d1odna_
        complexed with akg, edo, ni
    2. Domains for 5c3q:
      1. 2071238Domain d5c3qa1: 5c3q A:1-333 [278329]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      2. 2071239Domain d5c3qb_: 5c3q B: [278330]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      3. 2071240Domain d5c3qc_: 5c3q C: [278331]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
      4. 2071241Domain d5c3qd_: 5c3q D: [278336]
        Other proteins in same PDB: d5c3qa2
        automated match to d1odna_
        complexed with akg, edo, ni, tdr
    3. Domains for 5c3r:
      1. 2071250Domain d5c3ra_: 5c3r A: [278327]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      2. 2071251Domain d5c3rb_: 5c3r B: [278326]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      3. 2071252Domain d5c3rc_: 5c3r C: [278325]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
      4. 2071253Domain d5c3rd_: 5c3r D: [278328]
        automated match to d1odna_
        complexed with akg, edo, hmu, ni
    4. Domains for 5c3s:
      1. 2071246Domain d5c3sa1: 5c3s A:1-332 [278318]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      2. 2071247Domain d5c3sb_: 5c3s B: [278322]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      3. 2071248Domain d5c3sc_: 5c3s C: [278324]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
      4. 2071249Domain d5c3sd_: 5c3s D: [278323]
        Other proteins in same PDB: d5c3sa2
        automated match to d1odna_
        complexed with akg, edo, fyu, ni
  3. 2071254Human (Homo sapiens) [TaxId:9606] [255708] (2 PDB entries)
    1. Domains for 2ypd:
      1. 2071255Domain d2ypda1: 2ypd A:2157-2497 [244795]
        Other proteins in same PDB: d2ypda2, d2ypdb2
        automated match to d4c8da_
        complexed with emt, na
      2. 2071256Domain d2ypdb1: 2ypd B:2157-2497 [244796]
        Other proteins in same PDB: d2ypda2, d2ypdb2
        automated match to d4c8da_
        complexed with emt, na
    2. Domains for 5fzo:
      1. 2271284Domain d5fzob1: 5fzo B:2157-2498 [314589]
        Other proteins in same PDB: d5fzoa2, d5fzob2
        automated match to d4c8da_
        complexed with cl, edo, mn
      2. 2271285Domain d5fzoa1: 5fzo A:2157-2498 [314590]
        Other proteins in same PDB: d5fzoa2, d5fzob2
        automated match to d4c8da_
        complexed with cl, edo, mn
  4. 2071257Mycobacterium abscessus [TaxId:561007] [311480] (1 PDB entry)
  5. 2071266Mycobacterium avium [TaxId:243243] [189899] (1 PDB entry)
  6. 2071269Mycobacterium marinum [TaxId:216594] [196268] (1 PDB entry)
  7. 2071272Mycobacterium smegmatis [TaxId:246196] [193240] (1 PDB entry)
  8. 2071281Mycobacterium tuberculosis [TaxId:1773] [197235] (2 PDB entries)
    1. Domains for 4cvy:
      1. 2071282Domain d4cvya_: 4cvy A: [262636]
        automated match to d3swtb_
        complexed with fe, no3
      2. 2071283Domain d4cvyb_: 4cvy B: [262637]
        automated match to d3swtb_
        complexed with fe, no3
      3. 2071284Domain d4cvyc_: 4cvy C: [261654]
        automated match to d3swtb_
        complexed with fe, no3
      4. 2071285Domain d4cvyd_: 4cvy D: [261655]
        automated match to d3swtb_
        complexed with fe, no3
    2. Domains for 4ffa:
      1. 2071286Domain d4ffaa_: 4ffa A: [197236]
        automated match to d3r1ja_
        complexed with no3
      2. 2071287Domain d4ffab_: 4ffa B: [197237]
        automated match to d3r1ja_
        complexed with no3
      3. 2071288Domain d4ffac_: 4ffa C: [202031]
        automated match to d4ffaa_
        complexed with no3
      4. 2071289Domain d4ffad_: 4ffa D: [202032]
        automated match to d4ffaa_
        complexed with no3
  9. 2071290Pseudomonas putida [TaxId:160488] [259652] (2 PDB entries)
    1. Domains for 4iw3:
      1. 2071299Domain d4iw3a_: 4iw3 A: [259653]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
        automated match to d4jzra_
        complexed with gdp, mg, mn, oga
      2. 2071300Domain d4iw3j_: 4iw3 J: [259654]
        Other proteins in same PDB: d4iw3b1, d4iw3b2, d4iw3b3, d4iw3k1, d4iw3k2, d4iw3k3
        automated match to d4jzra_
        complexed with gdp, mg, mn, oga
    2. Domains for 4j25:
      1. 2071291Domain d4j25a1: 4j25 A:2-206 [259759]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4jzra_
        complexed with mn, oga
      2. 2071292Domain d4j25b1: 4j25 B:2-203 [262736]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      3. 2071293Domain d4j25c1: 4j25 C:2-202 [262737]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      4. 2071294Domain d4j25d1: 4j25 D:2-207 [262738]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      5. 2071295Domain d4j25e_: 4j25 E: [262739]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      6. 2071296Domain d4j25f_: 4j25 F: [262740]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      7. 2071297Domain d4j25g_: 4j25 G: [262741]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
      8. 2071298Domain d4j25h_: 4j25 H: [262742]
        Other proteins in same PDB: d4j25a2, d4j25b2, d4j25c2, d4j25d2
        automated match to d4j25a_
        complexed with mn, oga
  10. 2071301Rhizobium loti [TaxId:266835] [259686] (2 PDB entries)
    1. Domain for 4p7w:
    2. Domain for 4p7x:
  11. 2071304Yersinia pestis [TaxId:632] [268729] (1 PDB entry)
  12. 2271594Burkholderia xenovorans [TaxId:266265] [314895] (3 PDB entries)
    1. Domains for 5hsx:
      1. 2271595Domain d5hsxb_: 5hsx B: [314896]
        automated match to d3r1ja_
        complexed with edo, gol, na
      2. 2271699Domain d5hsxa_: 5hsx A: [315000]
        automated match to d1oiic_
        complexed with edo, gol, na
    2. Domains for 5j92:
      1. 2273961Domain d5j92d_: 5j92 D: [317262]
        automated match to d1otjc_
        complexed with act, fe2
      2. 2273988Domain d5j92b_: 5j92 B: [317289]
        automated match to d1otjc_
        complexed with act, fe2
      3. 2273991Domain d5j92c_: 5j92 C: [317292]
        automated match to d1otjc_
        complexed with act, fe2
      4. 2274043Domain d5j92a_: 5j92 A: [317344]
        automated match to d1otjc_
        complexed with act, fe2
    3. Domains for 5keu:
      1. 2275511Domain d5keub_: 5keu B: [318812]
        automated match to d5hsxb_
        complexed with edo, fmt, mg
      2. 2275520Domain d5keua_: 5keu A: [318821]
        automated match to d5hsxb_
        complexed with edo, fmt, mg
  13. 2291927Burkholderia ambifaria [TaxId:398577] [335228] (1 PDB entry)

More info for Protein automated matches from b.82.2.0: automated matches

Timeline for Protein automated matches from b.82.2.0: automated matches: