Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2363595Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
    sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
  4. 2363621Superfamily b.2.2: Carbohydrate-binding domain [49384] (4 families) (S)
  5. 2363742Family b.2.2.0: automated matches [191610] (1 protein)
    not a true family
  6. 2363743Protein automated matches [191113] (9 species)
    not a true protein

Species:

  1. 2363744Acetivibrio cellulolyticus [TaxId:35830] [189869] (5 PDB entries)
    1. Domain for 3zqw:
    2. Domain for 3zu8:
    3. Domain for 3zuc:
    4. Domains for 4uyp:
      1. 2363748Domain d4uypa1: 4uyp A:2-143 [271529]
        Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
        automated match to d4dh2a_
        complexed with ca, epe, mpd, so4; mutant
      2. 2363749Domain d4uypc1: 4uyp C:2-143 [271531]
        Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
        automated match to d4dh2a_
        complexed with ca, epe, mpd, so4; mutant
    5. Domain for 4uyq:
  2. 2363751Bacillus subtilis [TaxId:1423] [255415] (1 PDB entry)
  3. 2363753Bacteroides cellulosolvens [TaxId:35825] [189900] (2 PDB entries)
    1. Domain for 2xbt:
    2. Domain for 4ums:
  4. 2363756Clostridium clariflavum [TaxId:288965] [227912] (1 PDB entry)
  5. 2363758Clostridium thermocellum [TaxId:1515] [189176] (12 PDB entries)
    1. Domain for 2wnx:
    2. Domain for 2wo4:
    3. Domains for 2wob:
      1. 2363776Domain d2woba1: 2wob A:11-159 [169522]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
      2. 2363777Domain d2wobc1: 2wob C:9-159 [169523]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
      3. 2363778Domain d2wobe1: 2wob E:8-159 [169524]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
    4. Domains for 2ylk:
      1. 2363766Domain d2ylka1: 2ylk A:1-144 [198766]
        Other proteins in same PDB: d2ylka2
        automated match to d2ylkc_
      2. 2363767Domain d2ylkb_: 2ylk B: [195486]
        Other proteins in same PDB: d2ylka2
        automated match to d3zuca_
      3. 2363768Domain d2ylkc_: 2ylk C: [195485]
        Other proteins in same PDB: d2ylka2
        automated match to d3zuca_
      4. 2363769Domain d2ylkd_: 2ylk D: [198767]
        Other proteins in same PDB: d2ylka2
        automated match to d2ylkc_
    5. Domain for 3zqx:
    6. Domain for 4b97:
    7. Domain for 4b9p:
    8. Domains for 5gxx:
      1. 2363764Domain d5gxxa2: 5gxx A:472-628 [339457]
        Other proteins in same PDB: d5gxxa1, d5gxxa3, d5gxxb1
        automated match to d1tf4a2
        complexed with ca, cl, trs
      2. 2363765Domain d5gxxb2: 5gxx B:472-628 [339453]
        Other proteins in same PDB: d5gxxa1, d5gxxa3, d5gxxb1
        automated match to d1tf4a2
        complexed with ca, cl, trs
    9. Domains for 5gxy:
      1. 2363770Domain d5gxya2: 5gxy A:472-628 [339440]
        Other proteins in same PDB: d5gxya1, d5gxyb1
        automated match to d1tf4a2
        complexed with 7pe, bgc, br, ca, cl, trs
      2. 2363771Domain d5gxyb2: 5gxy B:472-628 [339444]
        Other proteins in same PDB: d5gxya1, d5gxyb1
        automated match to d1tf4a2
        complexed with 7pe, bgc, br, ca, cl, trs
    10. Domains for 5gxz:
      1. 2363779Domain d5gxza2: 5gxz A:472-628 [339448]
        Other proteins in same PDB: d5gxza1, d5gxzb1
        automated match to d1tf4a2
        complexed with 7pe, bgc, br, ca, cl
      2. 2363780Domain d5gxzb2: 5gxz B:472-628 [339450]
        Other proteins in same PDB: d5gxza1, d5gxzb1
        automated match to d1tf4a2
        complexed with 7pe, bgc, br, ca, cl
    11. Domains for 5gy0:
      1. 2363772Domain d5gy0a2: 5gy0 A:472-628 [339495]
        Other proteins in same PDB: d5gy0a1, d5gy0b1
        automated match to d1tf4a2
        complexed with bgc, br, ca, cl, pg4
      2. 2363773Domain d5gy0b2: 5gy0 B:472-628 [339446]
        Other proteins in same PDB: d5gy0a1, d5gy0b1
        automated match to d1tf4a2
        complexed with bgc, br, ca, cl, pg4
    12. Domains for 5gy1:
      1. 2363774Domain d5gy1a2: 5gy1 A:472-628 [339442]
        Other proteins in same PDB: d5gy1a1, d5gy1b1
        automated match to d1tf4a2
        complexed with bgc, br, ca, cl
      2. 2363775Domain d5gy1b2: 5gy1 B:472-628 [339481]
        Other proteins in same PDB: d5gy1a1, d5gy1b1
        automated match to d1tf4a2
        complexed with bgc, br, ca, cl
  6. 2363781Clostridium thermocellum [TaxId:203119] [194259] (4 PDB entries)
    1. Domain for 3ul4:
    2. Domain for 4b9c:
    3. Domains for 4c8x:
      1. 2363785Domain d4c8xa_: 4c8x A: [228169]
        automated match to d4b9fb_
        mutant
      2. 2363786Domain d4c8xb_: 4c8x B: [234292]
        automated match to d4c8xd_
        mutant
      3. 2363787Domain d4c8xc_: 4c8x C: [234293]
        automated match to d4c8xd_
        mutant
      4. 2363788Domain d4c8xd_: 4c8x D: [228168]
        automated match to d4b9fb_
        mutant
    4. Domains for 4dh2:
      1. 2363783Domain d4dh2a1: 4dh2 A:7-162 [234314]
        Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
        automated match to d3ul4a_
        complexed with ca, so4
      2. 2363784Domain d4dh2c1: 4dh2 C:8-162 [234315]
        Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
        automated match to d3ul4a_
        complexed with ca, so4
  7. 2363790Ruminiclostridium thermocellum [TaxId:1138384] [332524] (1 PDB entry)
  8. 2363792Ruminiclostridium thermocellum [TaxId:1249482] [332429] (1 PDB entry)
  9. 2363794Ruminococcus flavefaciens [TaxId:641112] [324254] (1 PDB entry)

More info for Protein automated matches from b.2.2.0: automated matches

Timeline for Protein automated matches from b.2.2.0: automated matches: