SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2033752Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
    sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
  4. 2033774Superfamily b.2.2: Carbohydrate-binding domain [49384] (4 families) (S)
  5. 2033894Family b.2.2.0: automated matches [191610] (1 protein)
    not a true family
  6. 2033895Protein automated matches [191113] (9 species)
    not a true protein

Species:

  1. 2033896Acetivibrio cellulolyticus [TaxId:35830] [189869] (5 PDB entries)
    1. Domain for 3zqw:
    2. Domain for 3zu8:
    3. Domain for 3zuc:
    4. Domains for 4uyp:
      1. 2033900Domain d4uypa1: 4uyp A:2-143 [271529]
        Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
        automated match to d4dh2a_
        complexed with ca, epe, mpd, so4; mutant
      2. 2033901Domain d4uypc1: 4uyp C:2-143 [271531]
        Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
        automated match to d4dh2a_
        complexed with ca, epe, mpd, so4; mutant
    5. Domain for 4uyq:
  2. 2033903Bacillus subtilis [TaxId:1423] [255415] (1 PDB entry)
  3. 2033905Bacteroides cellulosolvens [TaxId:35825] [189900] (2 PDB entries)
    1. Domain for 2xbt:
    2. Domain for 4ums:
  4. 2033908Clostridium clariflavum [TaxId:288965] [227912] (1 PDB entry)
  5. 2033910Clostridium thermocellum [TaxId:1515] [189176] (7 PDB entries)
    1. Domain for 2wnx:
    2. Domain for 2wo4:
    3. Domains for 2wob:
      1. 2033916Domain d2woba1: 2wob A:11-159 [169522]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
      2. 2033917Domain d2wobc1: 2wob C:9-159 [169523]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
      3. 2033918Domain d2wobe1: 2wob E:8-159 [169524]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
    4. Domains for 2ylk:
      1. 2033919Domain d2ylka1: 2ylk A:1-144 [198766]
        Other proteins in same PDB: d2ylka2
        automated match to d2ylkc_
      2. 2033920Domain d2ylkb_: 2ylk B: [195486]
        Other proteins in same PDB: d2ylka2
        automated match to d3zuca_
      3. 2033921Domain d2ylkc_: 2ylk C: [195485]
        Other proteins in same PDB: d2ylka2
        automated match to d3zuca_
      4. 2033922Domain d2ylkd_: 2ylk D: [198767]
        Other proteins in same PDB: d2ylka2
        automated match to d2ylkc_
    5. Domain for 3zqx:
    6. Domain for 4b97:
    7. Domain for 4b9p:
  6. 2033923Clostridium thermocellum [TaxId:203119] [194259] (4 PDB entries)
    1. Domain for 3ul4:
    2. Domain for 4b9c:
    3. Domains for 4c8x:
      1. 2033927Domain d4c8xa_: 4c8x A: [228169]
        automated match to d4b9fb_
        mutant
      2. 2033928Domain d4c8xb_: 4c8x B: [234292]
        automated match to d4c8xd_
        mutant
      3. 2033929Domain d4c8xc_: 4c8x C: [234293]
        automated match to d4c8xd_
        mutant
      4. 2033930Domain d4c8xd_: 4c8x D: [228168]
        automated match to d4b9fb_
        mutant
    4. Domains for 4dh2:
      1. 2033925Domain d4dh2a1: 4dh2 A:7-162 [234314]
        Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
        automated match to d3ul4a_
        complexed with ca, so4
      2. 2033926Domain d4dh2c1: 4dh2 C:8-162 [234315]
        Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
        automated match to d3ul4a_
        complexed with ca, so4
  7. 2280953Ruminococcus flavefaciens [TaxId:641112] [324254] (1 PDB entry)
  8. 2289128Ruminiclostridium thermocellum [TaxId:1249482] [332429] (1 PDB entry)
  9. 2289223Ruminiclostridium thermocellum [TaxId:1138384] [332524] (1 PDB entry)

More info for Protein automated matches from b.2.2.0: automated matches

Timeline for Protein automated matches from b.2.2.0: automated matches: