Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2033752Fold b.2: Common fold of diphtheria toxin/transcription factors/cytochrome f [49379] (9 superfamilies)
    sandwich; 9 strands in 2 sheet; greek-key; subclass of immunoglobin-like fold
  4. 2033774Superfamily b.2.2: Carbohydrate-binding domain [49384] (4 families) (S)
  5. 2033894Family b.2.2.0: automated matches [191610] (1 protein)
    not a true family
  6. 2033895Protein automated matches [191113] (9 species)
    not a true protein

Species:

  1. 2033896Acetivibrio cellulolyticus [TaxId:35830] [189869] (5 PDB entries)
    1. Domain for 3zqw:
    2. Domain for 3zu8:
    3. Domain for 3zuc:
    4. Domains for 4uyp:
      1. 2033900Domain d4uypa1: 4uyp A:2-143 [271529]
        Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
        automated match to d4dh2a_
        complexed with ca, epe, mpd, so4; mutant
      2. 2033901Domain d4uypc1: 4uyp C:2-143 [271531]
        Other proteins in same PDB: d4uypa2, d4uypa3, d4uypb_, d4uypc2, d4uypc3, d4uypd_
        automated match to d4dh2a_
        complexed with ca, epe, mpd, so4; mutant
    5. Domain for 4uyq:
  2. 2033903Bacillus subtilis [TaxId:1423] [255415] (1 PDB entry)
  3. 2033905Bacteroides cellulosolvens [TaxId:35825] [189900] (2 PDB entries)
    1. Domain for 2xbt:
    2. Domain for 4ums:
  4. 2033908Clostridium clariflavum [TaxId:288965] [227912] (1 PDB entry)
  5. 2033910Clostridium thermocellum [TaxId:1515] [189176] (7 PDB entries)
    1. Domain for 2wnx:
    2. Domain for 2wo4:
    3. Domains for 2wob:
      1. 2033916Domain d2woba1: 2wob A:11-159 [169522]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
      2. 2033917Domain d2wobc1: 2wob C:9-159 [169523]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
      3. 2033918Domain d2wobe1: 2wob E:8-159 [169524]
        Other proteins in same PDB: d2woba2, d2wobc2, d2wobe2
        automated match to d1g43a_
        complexed with ca
    4. Domains for 2ylk:
      1. 2033919Domain d2ylka1: 2ylk A:1-144 [198766]
        Other proteins in same PDB: d2ylka2
        automated match to d2ylkc_
      2. 2033920Domain d2ylkb_: 2ylk B: [195486]
        Other proteins in same PDB: d2ylka2
        automated match to d3zuca_
      3. 2033921Domain d2ylkc_: 2ylk C: [195485]
        Other proteins in same PDB: d2ylka2
        automated match to d3zuca_
      4. 2033922Domain d2ylkd_: 2ylk D: [198767]
        Other proteins in same PDB: d2ylka2
        automated match to d2ylkc_
    5. Domain for 3zqx:
    6. Domain for 4b97:
    7. Domain for 4b9p:
  6. 2033923Clostridium thermocellum [TaxId:203119] [194259] (4 PDB entries)
    1. Domain for 3ul4:
    2. Domain for 4b9c:
    3. Domains for 4c8x:
      1. 2033927Domain d4c8xa_: 4c8x A: [228169]
        automated match to d4b9fb_
        mutant
      2. 2033928Domain d4c8xb_: 4c8x B: [234292]
        automated match to d4c8xd_
        mutant
      3. 2033929Domain d4c8xc_: 4c8x C: [234293]
        automated match to d4c8xd_
        mutant
      4. 2033930Domain d4c8xd_: 4c8x D: [228168]
        automated match to d4b9fb_
        mutant
    4. Domains for 4dh2:
      1. 2033925Domain d4dh2a1: 4dh2 A:7-162 [234314]
        Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
        automated match to d3ul4a_
        complexed with ca, so4
      2. 2033926Domain d4dh2c1: 4dh2 C:8-162 [234315]
        Other proteins in same PDB: d4dh2a2, d4dh2b_, d4dh2c2, d4dh2d_
        automated match to d3ul4a_
        complexed with ca, so4
  7. 2280953Ruminococcus flavefaciens [TaxId:641112] [324254] (1 PDB entry)
  8. 2289128Ruminiclostridium thermocellum [TaxId:1249482] [332429] (1 PDB entry)
  9. 2289223Ruminiclostridium thermocellum [TaxId:1138384] [332524] (1 PDB entry)

More info for Protein automated matches from b.2.2.0: automated matches

Timeline for Protein automated matches from b.2.2.0: automated matches: