Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3021034Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. 3024792Fold f.23: Single transmembrane helix [81407] (42 superfamilies)
    not a true fold
    annotated by the SCOP(e) curators as 'not a true fold'
  4. 3026744Superfamily f.23.38: Cytochrome b559 subunits [161045] (1 family) (S)
  5. 3026745Family f.23.38.1: Cytochrome b559 subunits [161046] (3 proteins)
    Pfam PF00283 comprises PsbF beta subunit (PsbF) and the transmembrane helix of alpha subunit (PsbE) that bind one heme group between them; the lumenal region of the alpha subunit is covered by Pfam PF00284
  6. 3026798Protein automated matches [191000] (6 species)
    not a true protein

Species:

  1. 3026799Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [378006] (1 PDB entry)
  2. 3026802Pea (Pisum sativum) [TaxId:3888] [339410] (1 PDB entry)
  3. 3026805Synechocystis sp. [TaxId:1111708] [392994] (1 PDB entry)
  4. 3026808Thermosynechococcus elongatus [TaxId:197221] [326602] (6 PDB entries)
    1. Domain for 5h2f:
    2. Domains for 5kaf:
      1. 3026816Domain d5kafe_: 5kaf E: [327763]
        Other proteins in same PDB: d5kafa_, d5kafb_, d5kafc_, d5kafd_, d5kafh_, d5kafi1, d5kafi2, d5kafj_, d5kafk_, d5kafl_, d5kafm1, d5kafm2, d5kafo_, d5kaft1, d5kaft2, d5kafu_, d5kafv_, d5kafx_, d5kafz_
        automated match to d2axte1
        complexed with bcr, bct, cl, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, sqd, unl
      2. 3026817Domain d5kaff_: 5kaf f: [326603]
        Other proteins in same PDB: d5kafa_, d5kafb_, d5kafc_, d5kafd_, d5kafh_, d5kafi1, d5kafi2, d5kafj_, d5kafk_, d5kafl_, d5kafm1, d5kafm2, d5kafo_, d5kaft1, d5kaft2, d5kafu_, d5kafv_, d5kafx_, d5kafz_
        automated match to d2axtf1
        complexed with bcr, bct, cl, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, sqd, unl
    3. Domains for 5kai:
      1. 3026814Domain d5kaie_: 5kai e: [327778]
        Other proteins in same PDB: d5kaia_, d5kaib_, d5kaic_, d5kaid_, d5kaih_, d5kaii1, d5kaii2, d5kaij_, d5kaik_, d5kail_, d5kaim1, d5kaim2, d5kaio_, d5kait1, d5kait2, d5kaiu_, d5kaiv_, d5kaix_, d5kaiz_
        automated match to d2axte1
        complexed with bcr, bct, cl, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, sqd, unl
      2. 3026815Domain d5kaif_: 5kai F: [327749]
        Other proteins in same PDB: d5kaia_, d5kaib_, d5kaic_, d5kaid_, d5kaih_, d5kaii1, d5kaii2, d5kaij_, d5kaik_, d5kail_, d5kaim1, d5kaim2, d5kaio_, d5kait1, d5kait2, d5kaiu_, d5kaiv_, d5kaix_, d5kaiz_
        automated match to d2axtf1
        complexed with bcr, bct, cl, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, sqd, unl
    4. Domain for 5mx2:
    5. Domains for 5tis:
      1. 3026811Domain d5tise_: 5tis E: [327765]
        Other proteins in same PDB: d5tisa_, d5tisb_, d5tisc_, d5tisd_, d5tish_, d5tisi_, d5tisj_, d5tisk_, d5tisl_, d5tism_, d5tiso_, d5tist_, d5tisu_, d5tisv_, d5tisx_, d5tisz_
        automated match to d2axte1
        complexed with bcr, bct, cl, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, sqd, unl
      2. 3026812Domain d5tisf_: 5tis F: [327779]
        Other proteins in same PDB: d5tisa_, d5tisb_, d5tisc_, d5tisd_, d5tish_, d5tisi_, d5tisj_, d5tisk_, d5tisl_, d5tism_, d5tiso_, d5tist_, d5tisu_, d5tisv_, d5tisx_, d5tisz_
        automated match to d2axtf1
        complexed with bcr, bct, cl, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, sqd, unl
    6. Domain for 5zzn:
  5. 3026818Thermosynechococcus elongatus [TaxId:32046] [188745] (2 PDB entries)
    1. Domains for 3bz1:
      1. 3026821Domain d3bz1e_: 3bz1 E: [172944]
        Other proteins in same PDB: d3bz1a_, d3bz1b_, d3bz1c_, d3bz1d_, d3bz1h_, d3bz1i_, d3bz1j_, d3bz1k_, d3bz1l_, d3bz1m_, d3bz1o_, d3bz1t_, d3bz1u_, d3bz1v_, d3bz1x_, d3bz1z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
      2. 3026822Domain d3bz1f_: 3bz1 F: [172945]
        Other proteins in same PDB: d3bz1a_, d3bz1b_, d3bz1c_, d3bz1d_, d3bz1h_, d3bz1i_, d3bz1j_, d3bz1k_, d3bz1l_, d3bz1m_, d3bz1o_, d3bz1t_, d3bz1u_, d3bz1v_, d3bz1x_, d3bz1z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
    2. Domains for 3bz2:
      1. 3026819Domain d3bz2e_: 3bz2 E: [172955]
        Other proteins in same PDB: d3bz2a_, d3bz2b_, d3bz2c_, d3bz2d_, d3bz2h_, d3bz2i_, d3bz2j_, d3bz2k_, d3bz2l_, d3bz2m_, d3bz2o_, d3bz2t_, d3bz2u_, d3bz2v_, d3bz2x_, d3bz2z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
      2. 3026820Domain d3bz2f_: 3bz2 F: [172956]
        Other proteins in same PDB: d3bz2a_, d3bz2b_, d3bz2c_, d3bz2d_, d3bz2h_, d3bz2i_, d3bz2j_, d3bz2k_, d3bz2l_, d3bz2m_, d3bz2o_, d3bz2t_, d3bz2u_, d3bz2v_, d3bz2x_, d3bz2z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
  6. 3026823Thermosynechococcus vulcanus [TaxId:32053] [189914] (16 PDB entries)
    1. Domain for 3wu2:
    2. Domain for 4il6:
    3. Domain for 4ub6:
    4. Domain for 5b5e:
    5. Domain for 5b66:
    6. Domain for 5gth:
    7. Domain for 5v2c:
    8. Domains for 5ws5:
      1. 3026834Domain d5ws5e_: 5ws5 e: [331580]
        Other proteins in same PDB: d5ws5a_, d5ws5b_, d5ws5c_, d5ws5d_, d5ws5h_, d5ws5i_, d5ws5j_, d5ws5k_, d5ws5l_, d5ws5m1, d5ws5m2, d5ws5o_, d5ws5t_, d5ws5u_, d5ws5v_, d5ws5x_, d5ws5z_
        automated match to d2axte1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hec, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl
      2. 3026835Domain d5ws5f_: 5ws5 F: [331586]
        Other proteins in same PDB: d5ws5a_, d5ws5b_, d5ws5c_, d5ws5d_, d5ws5h_, d5ws5i_, d5ws5j_, d5ws5k_, d5ws5l_, d5ws5m1, d5ws5m2, d5ws5o_, d5ws5t_, d5ws5u_, d5ws5v_, d5ws5x_, d5ws5z_
        automated match to d2axtf1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hec, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl
    9. Domains for 5ws6:
      1. 3026839Domain d5ws6e_: 5ws6 e: [331507]
        Other proteins in same PDB: d5ws6a_, d5ws6b_, d5ws6c_, d5ws6d_, d5ws6h_, d5ws6i_, d5ws6j_, d5ws6k_, d5ws6l_, d5ws6m_, d5ws6o_, d5ws6t_, d5ws6u_, d5ws6v_, d5ws6x_, d5ws6z_
        automated match to d2axte1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hec, hem, htg, lhg, lmg, lmt, mg, oex, oey, pho, pl9, sqd, unl
      2. 3026840Domain d5ws6f_: 5ws6 F: [331587]
        Other proteins in same PDB: d5ws6a_, d5ws6b_, d5ws6c_, d5ws6d_, d5ws6h_, d5ws6i_, d5ws6j_, d5ws6k_, d5ws6l_, d5ws6m_, d5ws6o_, d5ws6t_, d5ws6u_, d5ws6v_, d5ws6x_, d5ws6z_
        automated match to d2axtf1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hec, hem, htg, lhg, lmg, lmt, mg, oex, oey, pho, pl9, sqd, unl
    10. Domains for 6jlj:
      1. 3026830Domain d6jlje_: 6jlj e: [375469]
        Other proteins in same PDB: d6jlja_, d6jljb_, d6jljc_, d6jljd_, d6jljh_, d6jlji_, d6jljj_, d6jljk_, d6jljl_, d6jljm_, d6jljo_, d6jljt_, d6jlju_, d6jljv_, d6jljx_, d6jljz_
        automated match to d2axte1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl
      2. 3026831Domain d6jljf_: 6jlj F: [375463]
        Other proteins in same PDB: d6jlja_, d6jljb_, d6jljc_, d6jljd_, d6jljh_, d6jlji_, d6jljj_, d6jljk_, d6jljl_, d6jljm_, d6jljo_, d6jljt_, d6jlju_, d6jljv_, d6jljx_, d6jljz_
        automated match to d2axtf1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl
    11. Domains for 6jlm:
      1. 3026836Domain d6jlme_: 6jlm e: [375501]
        Other proteins in same PDB: d6jlma_, d6jlmb_, d6jlmc_, d6jlmd_, d6jlmh_, d6jlmi_, d6jlmj_, d6jlmk_, d6jlml_, d6jlmm_, d6jlmo_, d6jlmt_, d6jlmu_, d6jlmv_, d6jlmx_, d6jlmz_
        automated match to d2axte1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl
      2. 3026837Domain d6jlmf_: 6jlm F: [375514]
        Other proteins in same PDB: d6jlma_, d6jlmb_, d6jlmc_, d6jlmd_, d6jlmh_, d6jlmi_, d6jlmj_, d6jlmk_, d6jlml_, d6jlmm_, d6jlmo_, d6jlmt_, d6jlmu_, d6jlmv_, d6jlmx_, d6jlmz_
        automated match to d2axtf1
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, gol, hem, htg, lhg, lmg, lmt, mg, oex, pho, pl9, sqd, unl
    12. Domain for 7d1t:
    13. Domain for 7d1u:
    14. Domains for 7dxa:
      1. 3026843Domain d7dxae_: 7dxa e: [405149]
        Other proteins in same PDB: d7dxaa_, d7dxab_, d7dxad_, d7dxah_, d7dxai_, d7dxal_, d7dxam_, d7dxat_, d7dxax_
        automated match to d2axte1
        complexed with bcr, cl, cla, dgd, fe2, hem, htg, lmt, mge, pho, pq9, sqd, unl
      2. 3026844Domain d7dxaf_: 7dxa f: [405081]
        Other proteins in same PDB: d7dxaa_, d7dxab_, d7dxad_, d7dxah_, d7dxai_, d7dxal_, d7dxam_, d7dxat_, d7dxax_
        automated match to d2axtf1
        complexed with bcr, cl, cla, dgd, fe2, hem, htg, lmt, mge, pho, pq9, sqd, unl
    15. Domains for 7dxh:
      1. 3026845Domain d7dxhe_: 7dxh e: [405088]
        Other proteins in same PDB: d7dxha_, d7dxhb_, d7dxhc_, d7dxhd_, d7dxhh_, d7dxhi_, d7dxhk_, d7dxhl_, d7dxhm_, d7dxht_, d7dxhx_, d7dxhz_
        automated match to d2axte1
        complexed with bcr, cl, cla, dgd, fe2, hem, htg, lmt, mge, pho, pq9, sqd, unl
      2. 3026846Domain d7dxhf_: 7dxh f: [405066]
        Other proteins in same PDB: d7dxha_, d7dxhb_, d7dxhc_, d7dxhd_, d7dxhh_, d7dxhi_, d7dxhk_, d7dxhl_, d7dxhm_, d7dxht_, d7dxhx_, d7dxhz_
        automated match to d2axtf1
        complexed with bcr, cl, cla, dgd, fe2, hem, htg, lmt, mge, pho, pq9, sqd, unl
    16. Domains for 7eda:
      1. 3026841Domain d7edae_: 7eda E: [418080]
        Other proteins in same PDB: d7edaa_, d7edab_, d7edac_, d7edad_, d7edah_, d7edaj_, d7edak_, d7edal_, d7edam_, d7edao_, d7edat_, d7edau_, d7edax_
        automated match to d2axte1
        complexed with bcr, bct, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, rrx, sqd, unl
      2. 3026842Domain d7edaf_: 7eda F: [418081]
        Other proteins in same PDB: d7edaa_, d7edab_, d7edac_, d7edad_, d7edah_, d7edaj_, d7edak_, d7edal_, d7edam_, d7edao_, d7edat_, d7edau_, d7edax_
        automated match to d7nhof_
        complexed with bcr, bct, cla, dgd, fe2, hec, hem, lhg, lmg, oex, pho, pl9, rrx, sqd, unl

More info for Protein automated matches from f.23.38.1: Cytochrome b559 subunits

Timeline for Protein automated matches from f.23.38.1: Cytochrome b559 subunits: