SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2223823Class f: Membrane and cell surface proteins and peptides [56835] (59 folds)
  3. 2226297Fold f.23: Single transmembrane helix [81407] (42 superfamilies)
    not a true fold
  4. 2227446Superfamily f.23.38: Cytochrome b559 subunits [161045] (1 family) (S)
  5. 2227447Family f.23.38.1: Cytochrome b559 subunits [161046] (3 protein domains)
    Pfam PF00283 comprises PsbF beta subunit (PsbF) and the transmembrane helix of alpha subunit (PsbE) that bind one heme group between them; the lumenal region of the alpha subunit is covered by Pfam PF00284
  6. 2227467Protein automated matches [191000] (3 species)
    not a true protein

Species:

  1. 2227468Thermosynechococcus elongatus [TaxId:32046] [188745] (2 PDB entries)
    1. Domains for 3bz1:
      1. 2227471Domain d3bz1e_: 3bz1 E: [172944]
        Other proteins in same PDB: d3bz1a_, d3bz1b_, d3bz1c_, d3bz1d_, d3bz1h_, d3bz1i_, d3bz1j_, d3bz1k_, d3bz1l_, d3bz1m_, d3bz1o_, d3bz1t_, d3bz1u_, d3bz1v_, d3bz1x_, d3bz1z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
      2. 2227472Domain d3bz1f_: 3bz1 F: [172945]
        Other proteins in same PDB: d3bz1a_, d3bz1b_, d3bz1c_, d3bz1d_, d3bz1h_, d3bz1i_, d3bz1j_, d3bz1k_, d3bz1l_, d3bz1m_, d3bz1o_, d3bz1t_, d3bz1u_, d3bz1v_, d3bz1x_, d3bz1z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
    2. Domains for 3bz2:
      1. 2227469Domain d3bz2e_: 3bz2 E: [172955]
        Other proteins in same PDB: d3bz2a_, d3bz2b_, d3bz2c_, d3bz2d_, d3bz2h_, d3bz2i_, d3bz2j_, d3bz2k_, d3bz2l_, d3bz2m_, d3bz2o_, d3bz2t_, d3bz2u_, d3bz2v_, d3bz2x_, d3bz2z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
      2. 2227470Domain d3bz2f_: 3bz2 F: [172956]
        Other proteins in same PDB: d3bz2a_, d3bz2b_, d3bz2c_, d3bz2d_, d3bz2h_, d3bz2i_, d3bz2j_, d3bz2k_, d3bz2l_, d3bz2m_, d3bz2o_, d3bz2t_, d3bz2u_, d3bz2v_, d3bz2x_, d3bz2z_
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
        complexed with bcr, bct, ca, cl, cla, dgd, fe2, hem, lhg, lmg, lmt, oec, pho, pl9, sqd
  2. 2227473Thermosynechococcus vulcanus [TaxId:32053] [189914] (5 PDB entries)
    1. Domain for 3wu2:
    2. Domain for 4il6:
    3. Domain for 4ub6:
    4. Domain for 5b5e:
    5. Domain for 5b66:
  3. 2283301Thermosynechococcus elongatus [TaxId:197221] [326602] (3 PDB entries)
    1. Domains for 5kaf:
      1. 2283302Domain d5kaff_: 5kaf f: [326603]
        Other proteins in same PDB: d5kafl_, d5kafm1, d5kafm2, d5kafo_
        automated match to d2axtf1
        complexed with bcr, bct, cl, cla, dgd, fe2, hem, lhg, lmg, oex, pho, pl9, sqd, unl
      2. 2284462Domain d5kafe_: 5kaf E: [327763]
        Other proteins in same PDB: d5kafa_, d5kafb_, d5kafc_, d5kafd_, d5kafh_, d5kafi1, d5kafi2, d5kafj_, d5kafk_, d5kaft1, d5kaft2, d5kafu_, d5kafv_, d5kafx_, d5kafz_
        automated match to d2axte1
        complexed with bcr, bct, cl, cla, dgd, fe2, hem, lhg, lmg, oex, pho, pl9, sqd, unl
    2. Domains for 5kai:
      1. 2284448Domain d5kaif_: 5kai F: [327749]
        Other proteins in same PDB: d5kaia_, d5kaib_, d5kaid_, d5kaih_, d5kaii1, d5kaii2, d5kaij_, d5kaik_, d5kaio_, d5kaiu_, d5kaiv_, d5kaix_, d5kaiz_
        automated match to d2axtf1
        complexed with bcr, bct, cl, cla, dgd, fe2, hem, lhg, lmg, oex, pho, pl9, sqd, unl
      2. 2284477Domain d5kaie_: 5kai e: [327778]
        Other proteins in same PDB: d5kaia_, d5kaib_, d5kaid_, d5kaih_, d5kaii1, d5kaii2, d5kaij_, d5kaik_, d5kaio_, d5kaiu_, d5kaiv_, d5kaix_, d5kaiz_
        automated match to d2axte1
        complexed with bcr, bct, cl, cla, dgd, fe2, hem, lhg, lmg, oex, pho, pl9, sqd, unl
    3. Domains for 5tis:
      1. 2284464Domain d5tise_: 5tis E: [327765]
        Other proteins in same PDB: d5tisa_, d5tisb_, d5tisd_, d5tish_, d5tisi_, d5tiso_, d5tist_, d5tisu_, d5tisv_, d5tisx_, d5tisz_
        automated match to d2axte1
        complexed with bcr, bct, cl, cla, dgd, fe2, hem, lhg, lmg, oex, pho, pl9, sqd, unl
      2. 2284478Domain d5tisf_: 5tis F: [327779]
        Other proteins in same PDB: d5tisa_, d5tisb_, d5tisd_, d5tish_, d5tisi_, d5tiso_, d5tist_, d5tisu_, d5tisv_, d5tisx_, d5tisz_
        automated match to d2axtf1
        complexed with bcr, bct, cl, cla, dgd, fe2, hem, lhg, lmg, oex, pho, pl9, sqd, unl

More info for Protein automated matches from f.23.38.1: Cytochrome b559 subunits

Timeline for Protein automated matches from f.23.38.1: Cytochrome b559 subunits: