Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2445599Fold c.33: Isochorismatase-like hydrolases [52498] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. 2445600Superfamily c.33.1: Isochorismatase-like hydrolases [52499] (2 families) (S)
  5. 2445653Family c.33.1.0: automated matches [191389] (1 protein)
    not a true family
  6. 2445654Protein automated matches [190499] (24 species)
    not a true protein

Species:

  1. 2445655Acinetobacter baumannii [TaxId:509173] [255667] (2 PDB entries)
    1. Domains for 2wt9:
      1. 2445657Domain d2wt9a_: 2wt9 A: [244278]
        automated match to d3hu5a_
        complexed with gol, nio, zn
      2. 2445658Domain d2wt9b_: 2wt9 B: [244279]
        automated match to d3hu5a_
        complexed with gol, nio, zn
    2. Domain for 2wta:
  2. 2445659Alkaliphilus metalliredigens [TaxId:293826] [225721] (1 PDB entry)
  3. 2445668Bordetella bronchiseptica [TaxId:518] [256004] (2 PDB entries)
    1. Domains for 3ot4:
      1. 2445677Domain d3ot4a_: 3ot4 A: [262313]
        automated match to d3uaod_
      2. 2445678Domain d3ot4b_: 3ot4 B: [262314]
        automated match to d3uaod_
      3. 2445679Domain d3ot4c_: 3ot4 C: [248326]
        automated match to d3hb7a_
      4. 2445680Domain d3ot4d_: 3ot4 D: [248327]
        automated match to d3hb7a_
      5. 2445681Domain d3ot4e_: 3ot4 E: [262315]
        automated match to d3uaod_
      6. 2445682Domain d3ot4f_: 3ot4 F: [248328]
        automated match to d3hb7a_
      7. 2445683Domain d3ot4g_: 3ot4 G: [248329]
        automated match to d3hb7a_
      8. 2445684Domain d3ot4h_: 3ot4 H: [248330]
        automated match to d3hb7a_
    2. Domains for 3uao:
      1. 2445669Domain d3uaoa_: 3uao A: [262345]
        automated match to d3uaod_
        complexed with act
      2. 2445670Domain d3uaob_: 3uao B: [262346]
        automated match to d3uaod_
        complexed with act
      3. 2445671Domain d3uaoc_: 3uao C: [262347]
        automated match to d3uaod_
        complexed with act
      4. 2445672Domain d3uaod_: 3uao D: [250183]
        automated match to d3hb7a_
        complexed with act
      5. 2445673Domain d3uaoe_: 3uao E: [262348]
        automated match to d3uaod_
        complexed with act
      6. 2445674Domain d3uaof_: 3uao F: [250184]
        automated match to d3hb7a_
        complexed with act
      7. 2445675Domain d3uaog_: 3uao G: [250185]
        automated match to d3hb7a_
        complexed with act
      8. 2445676Domain d3uaoh_: 3uao H: [250186]
        automated match to d3hb7a_
        complexed with act
  4. 2445685Burkholderia thailandensis [TaxId:271848] [189741] (1 PDB entry)
  5. 2445687Burkholderia xenovorans [TaxId:266265] [225992] (1 PDB entry)
  6. 2445690Chromobacterium violaceum [TaxId:243365] [193722] (1 PDB entry)
  7. 2445693Desulfovibrio vulgaris [TaxId:882] [225697] (1 PDB entry)
  8. 2445696Leishmania infantum [TaxId:5671] [256047] (1 PDB entry)
  9. 2445701Microbacterium hydrocarbonoxydans [TaxId:273678] [328695] (3 PDB entries)
    1. Domain for 5ha8:
    2. Domain for 5hwg:
    3. Domain for 5hwh:
  10. 2445705Mycobacterium tuberculosis [TaxId:83332] [189601] (2 PDB entries)
    1. Domain for 3gbc:
    2. Domain for 3pl1:
  11. 2445708Nematode (Caenorhabditis elegans) [TaxId:6239] [187443] (1 PDB entry)
  12. 2445717Oleispira antarctica [TaxId:188908] [189277] (1 PDB entry)
  13. 2445719Pseudomonas putida [TaxId:1042876] [257820] (2 PDB entries)
    1. Domains for 4l07:
      1. 2445720Domain d4l07a_: 4l07 A: [257822]
        automated match to d3ot4c_
        complexed with gol, so4
      2. 2445721Domain d4l07b_: 4l07 B: [257821]
        automated match to d3ot4c_
        complexed with gol, so4
    2. Domains for 4l08:
      1. 2445722Domain d4l08a_: 4l08 A: [257823]
        automated match to d3ot4f_
        complexed with mae
      2. 2445723Domain d4l08b_: 4l08 B: [262887]
        automated match to d4l07a_
        complexed with mae
      3. 2445724Domain d4l08c_: 4l08 C: [262888]
        automated match to d4l07a_
        complexed with mae
      4. 2445725Domain d4l08d_: 4l08 D: [262889]
        automated match to d4l07a_
        complexed with mae
      5. 2445726Domain d4l08e_: 4l08 E: [262890]
        automated match to d4l07a_
        complexed with mae
      6. 2445727Domain d4l08f_: 4l08 F: [262891]
        automated match to d4l07a_
        complexed with mae
      7. 2445728Domain d4l08g_: 4l08 G: [262892]
        automated match to d4l07a_
        complexed with mae
      8. 2445729Domain d4l08h_: 4l08 H: [262893]
        automated match to d4l07a_
        complexed with mae
  14. 2445730Pseudomonas putida [TaxId:160488] [226529] (1 PDB entry)
  15. 2445733Pseudomonas syringae [TaxId:264730] [255894] (1 PDB entry)
  16. 2445735Streptococcus mutans [TaxId:1309] [256077] (1 PDB entry)
  17. 2445740Streptococcus pneumoniae [TaxId:170187] [255991] (5 PDB entries)
    1. Domains for 3o90:
      1. 2445757Domain d3o90a_: 3o90 A: [248129]
        automated match to d3hb7d_
        complexed with zn
      2. 2445758Domain d3o90b_: 3o90 B: [248130]
        automated match to d3hb7d_
        complexed with zn
      3. 2445759Domain d3o90c_: 3o90 C: [248131]
        automated match to d3hb7d_
        complexed with zn
      4. 2445760Domain d3o90d_: 3o90 D: [248132]
        automated match to d3hb7d_
        complexed with zn
    2. Domains for 3o91:
      1. 2445745Domain d3o91a_: 3o91 A: [248133]
        automated match to d3hb7b_
        complexed with zn
      2. 2445746Domain d3o91b_: 3o91 B: [248134]
        automated match to d3hb7b_
        complexed with zn
      3. 2445747Domain d3o91c_: 3o91 C: [248135]
        automated match to d3hb7b_
        complexed with zn
      4. 2445748Domain d3o91d_: 3o91 D: [248136]
        automated match to d3hb7b_
        complexed with zn
    3. Domains for 3o92:
      1. 2445753Domain d3o92a_: 3o92 A: [248137]
        automated match to d3hb7b_
        complexed with zn
      2. 2445754Domain d3o92b_: 3o92 B: [248138]
        automated match to d3hb7b_
        complexed with zn
      3. 2445755Domain d3o92c_: 3o92 C: [248139]
        automated match to d3hb7b_
        complexed with zn
      4. 2445756Domain d3o92d_: 3o92 D: [248140]
        automated match to d3hb7b_
        complexed with zn
    4. Domains for 3o93:
      1. 2445749Domain d3o93a_: 3o93 A: [248141]
        automated match to d3hb7b_
        complexed with zn
      2. 2445750Domain d3o93b_: 3o93 B: [248142]
        automated match to d3hb7b_
        complexed with zn
      3. 2445751Domain d3o93c_: 3o93 C: [248143]
        automated match to d3hb7b_
        complexed with zn
      4. 2445752Domain d3o93d_: 3o93 D: [248144]
        automated match to d3hb7b_
        complexed with zn
    5. Domains for 3o94:
      1. 2445741Domain d3o94a_: 3o94 A: [248145]
        automated match to d3hb7b_
        complexed with nca, zn
      2. 2445742Domain d3o94b_: 3o94 B: [248146]
        automated match to d3hb7b_
        complexed with nca, zn
      3. 2445743Domain d3o94c_: 3o94 C: [248147]
        automated match to d3hb7b_
        complexed with nca, zn
      4. 2445744Domain d3o94d_: 3o94 D: [248148]
        automated match to d3hb7b_
        complexed with nca, zn
  18. 2445761Streptomyces avermitilis [TaxId:33903] [189136] (1 PDB entry)
  19. 2445774Thermoplasma acidophilum [TaxId:2303] [225522] (1 PDB entry)
  20. 2445777Trypanosoma cruzi [TaxId:5693] [188160] (1 PDB entry)
  21. 2445779Vibrio anguillarum [TaxId:882102] [340428] (4 PDB entries)
    1. Domains for 5gle:
      1. 2445780Domain d5glea_: 5gle A: [340429]
        automated match to d1nf9a_
      2. 2445781Domain d5gleb_: 5gle B: [340433]
        automated match to d3r77b_
    2. Domains for 5wxv:
      1. 3048170Domain d5wxva_: 5wxv A: [348232]
        automated match to d5gleb_
      2. 3048182Domain d5wxvi_: 5wxv I: [348244]
        automated match to d5gleb_
      3. 3048183Domain d5wxvk_: 5wxv K: [348245]
        automated match to d5gleb_
      4. 3048210Domain d5wxvf_: 5wxv F: [348272]
        automated match to d5gleb_
      5. 3048212Domain d5wxvg_: 5wxv G: [348274]
        automated match to d5gleb_
      6. 3048220Domain d5wxvj_: 5wxv J: [348282]
        automated match to d5gleb_
      7. 3048254Domain d5wxvh_: 5wxv H: [348316]
        automated match to d5gleb_
      8. 3048279Domain d5wxvl_: 5wxv L: [348341]
        automated match to d5gleb_
      9. 3048302Domain d5wxvb_: 5wxv B: [348364]
        automated match to d5gleb_
      10. 3048362Domain d5wxvc_: 5wxv C: [348424]
        automated match to d5gleb_
      11. 3048413Domain d5wxvd_: 5wxv D: [348475]
        automated match to d5gleb_
      12. 3048431Domain d5wxve_: 5wxv E: [348493]
        automated match to d5gleb_
    3. Domains for 5xo0:
      1. 3052961Domain d5xo0b1: 5xo0 B:1-208 [353023]
        Other proteins in same PDB: d5xo0a2, d5xo0b2
        automated match to d5glea_
      2. 3052999Domain d5xo0a1: 5xo0 A:1-208 [353061]
        Other proteins in same PDB: d5xo0a2, d5xo0b2
        automated match to d5glea_
    4. Domains for 5xo1:
      1. 3052950Domain d5xo1f_: 5xo1 F: [353012]
        automated match to d5gleb_
      2. 3052953Domain d5xo1b_: 5xo1 B: [353015]
        automated match to d5gleb_
      3. 3052957Domain d5xo1c_: 5xo1 C: [353019]
        automated match to d5gleb_
      4. 3052971Domain d5xo1a_: 5xo1 A: [353033]
        automated match to d5gleb_
      5. 3052980Domain d5xo1d_: 5xo1 D: [353042]
        automated match to d5gleb_
      6. 3052998Domain d5xo1e_: 5xo1 E: [353060]
        automated match to d5gleb_
  22. 2445782Vibrio cholerae [TaxId:666] [226451] (2 PDB entries)
    1. Domain for 3tb4:
    2. Domain for 3tg2:
  23. 3046422Rhizobium leguminosarum [TaxId:216596] [346484] (5 PDB entries)
    1. Domains for 5bk6:
      1. 3046423Domain d5bk6b_: 5bk6 B: [346485]
        automated match to d3irva_
        complexed with btb, gol
      2. 3046496Domain d5bk6c_: 5bk6 C: [346558]
        automated match to d3irva_
        complexed with btb, gol
      3. 3046561Domain d5bk6a_: 5bk6 A: [346623]
        automated match to d3irva_
        complexed with btb, gol
      4. 3046679Domain d5bk6d_: 5bk6 D: [346741]
        automated match to d3irva_
        complexed with btb, gol
    2. Domains for 6azn:
      1. 3049227Domain d6aznf_: 6azn F: [349289]
        automated match to d3irva_
        complexed with edo, po4
      2. 3049239Domain d6azni_: 6azn I: [349301]
        automated match to d3irva_
        complexed with edo, po4
      3. 3049257Domain d6aznh_: 6azn H: [349319]
        automated match to d3irva_
        complexed with edo, po4
      4. 3049269Domain d6azng_: 6azn G: [349331]
        automated match to d3irva_
        complexed with edo, po4
      5. 3049282Domain d6aznd_: 6azn D: [349344]
        automated match to d3irva_
        complexed with edo, po4
      6. 3049401Domain d6aznc_: 6azn C: [349463]
        automated match to d3irva_
        complexed with edo, po4
      7. 3049441Domain d6azna_: 6azn A: [349503]
        automated match to d3irva_
        complexed with edo, po4
      8. 3049488Domain d6aznb_: 6azn B: [349550]
        automated match to d3irva_
        complexed with edo, po4
    3. Domains for 6azo:
      1. 3049218Domain d6azoa1: 6azo A:8-233 [349280]
        Other proteins in same PDB: d6azoa2, d6azob2, d6azoc2, d6azod2
        automated match to d3irva_
        complexed with cl
      2. 3049273Domain d6azob1: 6azo B:8-233 [349335]
        Other proteins in same PDB: d6azoa2, d6azob2, d6azoc2, d6azod2
        automated match to d3irva_
        complexed with cl
      3. 3049361Domain d6azod1: 6azo D:8-233 [349423]
        Other proteins in same PDB: d6azoa2, d6azob2, d6azoc2, d6azod2
        automated match to d3irva_
        complexed with cl
      4. 3049411Domain d6azoc1: 6azo C:7-233 [349473]
        Other proteins in same PDB: d6azoa2, d6azob2, d6azoc2, d6azod2
        automated match to d3irva_
        complexed with cl
    4. Domains for 6azq:
      1. 3049216Domain d6azqa_: 6azq A: [349278]
        automated match to d3irva_
        complexed with c5j, ca
      2. 3049262Domain d6azqc_: 6azq C: [349324]
        automated match to d3irva_
        complexed with c5j, ca
      3. 3049267Domain d6azqf_: 6azq F: [349329]
        automated match to d3irva_
        complexed with c5j, ca
      4. 3049316Domain d6azqd_: 6azq D: [349378]
        automated match to d3irva_
        complexed with c5j, ca
      5. 3049323Domain d6azqg_: 6azq G: [349385]
        automated match to d3irva_
        complexed with c5j, ca
      6. 3049327Domain d6azqh_: 6azq H: [349389]
        automated match to d3irva_
        complexed with c5j, ca
      7. 3049491Domain d6azqb_: 6azq B: [349553]
        automated match to d3irva_
        complexed with c5j, ca
      8. 3049515Domain d6azqe_: 6azq E: [349577]
        automated match to d3irva_
        complexed with c5j, ca
    5. Domains for 6azs:
      1. 3049272Domain d6azsb_: 6azs B: [349334]
        automated match to d3irva_
        complexed with btb, c5s, cl, gol, peg
      2. 3049291Domain d6azsc_: 6azs C: [349353]
        automated match to d3irva_
        complexed with btb, c5s, cl, gol, peg
      3. 3049299Domain d6azsd_: 6azs D: [349361]
        automated match to d3irva_
        complexed with btb, c5s, cl, gol, peg
      4. 3049359Domain d6azsa_: 6azs A: [349421]
        automated match to d3irva_
        complexed with btb, c5s, cl, gol, peg
  24. 3051495Bacillus subtilis [TaxId:1423] [351557] (2 PDB entries)
    1. Domains for 5zn8:
      1. 3051496Domain d5zn8b_: 5zn8 B: [351558]
        automated match to d3o94a_
        complexed with zn
      2. 3051497Domain d5zn8a_: 5zn8 A: [351559]
        automated match to d3o94a_
        complexed with zn
    2. Domains for 6a8l:
      1. 3055344Domain d6a8lb_: 6a8l B: [355406]
        automated match to d3o94a_
        complexed with zn
      2. 3055349Domain d6a8la_: 6a8l A: [355411]
        automated match to d3o94a_
        complexed with zn

More info for Protein automated matches from c.33.1.0: automated matches

Timeline for Protein automated matches from c.33.1.0: automated matches: