SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2108002Fold c.33: Isochorismatase-like hydrolases [52498] (1 superfamily)
    3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456
  4. 2108003Superfamily c.33.1: Isochorismatase-like hydrolases [52499] (2 families) (S)
  5. 2108056Family c.33.1.0: automated matches [191389] (1 protein)
    not a true family
  6. 2108057Protein automated matches [190499] (21 species)
    not a true protein

Species:

  1. 2108058Acinetobacter baumannii [TaxId:509173] [255667] (2 PDB entries)
    1. Domains for 2wt9:
      1. 2108060Domain d2wt9a_: 2wt9 A: [244278]
        automated match to d3hu5a_
        complexed with gol, nio, zn
      2. 2108061Domain d2wt9b_: 2wt9 B: [244279]
        automated match to d3hu5a_
        complexed with gol, nio, zn
    2. Domain for 2wta:
  2. 2108062Alkaliphilus metalliredigens [TaxId:293826] [225721] (1 PDB entry)
  3. 2108071Bordetella bronchiseptica [TaxId:518] [256004] (2 PDB entries)
    1. Domains for 3ot4:
      1. 2108080Domain d3ot4a_: 3ot4 A: [262313]
        automated match to d3uaod_
      2. 2108081Domain d3ot4b_: 3ot4 B: [262314]
        automated match to d3uaod_
      3. 2108082Domain d3ot4c_: 3ot4 C: [248326]
        automated match to d3hb7a_
      4. 2108083Domain d3ot4d_: 3ot4 D: [248327]
        automated match to d3hb7a_
      5. 2108084Domain d3ot4e_: 3ot4 E: [262315]
        automated match to d3uaod_
      6. 2108085Domain d3ot4f_: 3ot4 F: [248328]
        automated match to d3hb7a_
      7. 2108086Domain d3ot4g_: 3ot4 G: [248329]
        automated match to d3hb7a_
      8. 2108087Domain d3ot4h_: 3ot4 H: [248330]
        automated match to d3hb7a_
    2. Domains for 3uao:
      1. 2108072Domain d3uaoa_: 3uao A: [262345]
        automated match to d3uaod_
        complexed with act
      2. 2108073Domain d3uaob_: 3uao B: [262346]
        automated match to d3uaod_
        complexed with act
      3. 2108074Domain d3uaoc_: 3uao C: [262347]
        automated match to d3uaod_
        complexed with act
      4. 2108075Domain d3uaod_: 3uao D: [250183]
        automated match to d3hb7a_
        complexed with act
      5. 2108076Domain d3uaoe_: 3uao E: [262348]
        automated match to d3uaod_
        complexed with act
      6. 2108077Domain d3uaof_: 3uao F: [250184]
        automated match to d3hb7a_
        complexed with act
      7. 2108078Domain d3uaog_: 3uao G: [250185]
        automated match to d3hb7a_
        complexed with act
      8. 2108079Domain d3uaoh_: 3uao H: [250186]
        automated match to d3hb7a_
        complexed with act
  4. 2108088Burkholderia thailandensis [TaxId:271848] [189741] (1 PDB entry)
  5. 2108090Burkholderia xenovorans [TaxId:266265] [225992] (1 PDB entry)
  6. 2108093Chromobacterium violaceum [TaxId:243365] [193722] (1 PDB entry)
  7. 2108096Desulfovibrio vulgaris [TaxId:882] [225697] (1 PDB entry)
  8. 2108099Leishmania infantum [TaxId:5671] [256047] (1 PDB entry)
  9. 2108104Mycobacterium tuberculosis [TaxId:83332] [189601] (2 PDB entries)
    1. Domain for 3gbc:
    2. Domain for 3pl1:
  10. 2108107Nematode (Caenorhabditis elegans) [TaxId:6239] [187443] (1 PDB entry)
  11. 2108116Oleispira antarctica [TaxId:188908] [189277] (1 PDB entry)
  12. 2108118Pseudomonas putida [TaxId:1042876] [257820] (2 PDB entries)
    1. Domains for 4l07:
      1. 2108119Domain d4l07a_: 4l07 A: [257822]
        automated match to d3ot4c_
        complexed with gol, so4
      2. 2108120Domain d4l07b_: 4l07 B: [257821]
        automated match to d3ot4c_
        complexed with gol, so4
    2. Domains for 4l08:
      1. 2108121Domain d4l08a_: 4l08 A: [257823]
        automated match to d3ot4f_
        complexed with mae
      2. 2108122Domain d4l08b_: 4l08 B: [262887]
        automated match to d4l07a_
        complexed with mae
      3. 2108123Domain d4l08c_: 4l08 C: [262888]
        automated match to d4l07a_
        complexed with mae
      4. 2108124Domain d4l08d_: 4l08 D: [262889]
        automated match to d4l07a_
        complexed with mae
      5. 2108125Domain d4l08e_: 4l08 E: [262890]
        automated match to d4l07a_
        complexed with mae
      6. 2108126Domain d4l08f_: 4l08 F: [262891]
        automated match to d4l07a_
        complexed with mae
      7. 2108127Domain d4l08g_: 4l08 G: [262892]
        automated match to d4l07a_
        complexed with mae
      8. 2108128Domain d4l08h_: 4l08 H: [262893]
        automated match to d4l07a_
        complexed with mae
  13. 2108129Pseudomonas putida [TaxId:160488] [226529] (1 PDB entry)
  14. 2108132Pseudomonas syringae [TaxId:264730] [255894] (1 PDB entry)
  15. 2108134Streptococcus mutans [TaxId:1309] [256077] (1 PDB entry)
  16. 2108139Streptococcus pneumoniae [TaxId:170187] [255991] (5 PDB entries)
    1. Domains for 3o90:
      1. 2108156Domain d3o90a_: 3o90 A: [248129]
        automated match to d3hb7d_
        complexed with zn
      2. 2108157Domain d3o90b_: 3o90 B: [248130]
        automated match to d3hb7d_
        complexed with zn
      3. 2108158Domain d3o90c_: 3o90 C: [248131]
        automated match to d3hb7d_
        complexed with zn
      4. 2108159Domain d3o90d_: 3o90 D: [248132]
        automated match to d3hb7d_
        complexed with zn
    2. Domains for 3o91:
      1. 2108144Domain d3o91a_: 3o91 A: [248133]
        automated match to d3hb7b_
        complexed with zn
      2. 2108145Domain d3o91b_: 3o91 B: [248134]
        automated match to d3hb7b_
        complexed with zn
      3. 2108146Domain d3o91c_: 3o91 C: [248135]
        automated match to d3hb7b_
        complexed with zn
      4. 2108147Domain d3o91d_: 3o91 D: [248136]
        automated match to d3hb7b_
        complexed with zn
    3. Domains for 3o92:
      1. 2108152Domain d3o92a_: 3o92 A: [248137]
        automated match to d3hb7b_
        complexed with zn
      2. 2108153Domain d3o92b_: 3o92 B: [248138]
        automated match to d3hb7b_
        complexed with zn
      3. 2108154Domain d3o92c_: 3o92 C: [248139]
        automated match to d3hb7b_
        complexed with zn
      4. 2108155Domain d3o92d_: 3o92 D: [248140]
        automated match to d3hb7b_
        complexed with zn
    4. Domains for 3o93:
      1. 2108148Domain d3o93a_: 3o93 A: [248141]
        automated match to d3hb7b_
        complexed with zn
      2. 2108149Domain d3o93b_: 3o93 B: [248142]
        automated match to d3hb7b_
        complexed with zn
      3. 2108150Domain d3o93c_: 3o93 C: [248143]
        automated match to d3hb7b_
        complexed with zn
      4. 2108151Domain d3o93d_: 3o93 D: [248144]
        automated match to d3hb7b_
        complexed with zn
    5. Domains for 3o94:
      1. 2108140Domain d3o94a_: 3o94 A: [248145]
        automated match to d3hb7b_
        complexed with nca, zn
      2. 2108141Domain d3o94b_: 3o94 B: [248146]
        automated match to d3hb7b_
        complexed with nca, zn
      3. 2108142Domain d3o94c_: 3o94 C: [248147]
        automated match to d3hb7b_
        complexed with nca, zn
      4. 2108143Domain d3o94d_: 3o94 D: [248148]
        automated match to d3hb7b_
        complexed with nca, zn
  17. 2108160Streptomyces avermitilis [TaxId:33903] [189136] (1 PDB entry)
  18. 2108173Thermoplasma acidophilum [TaxId:2303] [225522] (1 PDB entry)
  19. 2108176Trypanosoma cruzi [TaxId:5693] [188160] (1 PDB entry)
  20. 2108178Vibrio cholerae [TaxId:666] [226451] (2 PDB entries)
    1. Domain for 3tb4:
    2. Domain for 3tg2:
  21. 2285394Microbacterium hydrocarbonoxydans [TaxId:273678] [328695] (3 PDB entries)
    1. Domain for 5ha8:
    2. Domain for 5hwg:
    3. Domain for 5hwh:

More info for Protein automated matches from c.33.1.0: automated matches

Timeline for Protein automated matches from c.33.1.0: automated matches: